Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 0.0e+00 1284.2 645 100.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.4e-228 796.6 644 64.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.6e-222 775.8 640 63.6
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.8e-221 771.9 618 64.7
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 8.2e-216 754.2 621 61.4
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.8e-207 726.5 654 58.9
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 2.4e-207 726.1 647 60.4
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 5.3e-207 724.9 646 61.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.0e-206 723.0 627 59.0
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.0e-205 720.7 625 59.0
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.7e-205 719.9 643 61.1
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 5.0e-205 718.4 643 60.8
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.6e-203 713.4 579 64.9
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.6e-203 713.4 648 60.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 6.1e-203 711.4 628 58.9
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.1e-201 707.2 638 58.0
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.0e-201 706.4 647 59.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.6e-201 706.1 630 57.9
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 2.2e-200 703.0 615 61.0
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.1e-199 700.7 633 57.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 9.1e-199 697.6 642 58.7
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 8.5e-197 691.0 643 57.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 3.2e-196 689.1 626 58.3
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 4.2e-196 688.7 640 56.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.2e-195 687.2 643 57.4
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.7e-195 686.0 646 54.8
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 6.1e-195 684.9 629 56.6
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.0e-194 684.1 678 54.1
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 3.0e-194 682.6 629 58.2
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.5e-193 680.2 628 56.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.5e-193 680.2 627 58.1
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 9.7e-193 677.6 627 56.0
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 9.7e-193 677.6 634 56.9
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.7e-192 676.8 617 57.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 6.3e-192 674.9 647 56.1
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 8.2e-192 674.5 632 55.4
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.4e-191 672.9 646 54.6
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.2e-190 670.6 647 56.4
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.2e-190 670.6 629 56.1
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.5e-190 669.1 624 56.1
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 3.5e-190 669.1 623 56.0
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.3e-189 667.2 634 55.8
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.7e-189 666.8 658 54.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.7e-189 666.8 635 56.1
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 3.8e-189 665.6 633 56.7
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.1e-188 664.1 623 56.8
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.1e-188 664.1 629 57.4
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 3.2e-188 662.5 629 57.2
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 7.2e-188 661.4 625 55.8
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 1.2e-187 660.6 643 54.3
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.2e-187 660.6 647 56.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-187 660.6 645 54.9
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.7e-187 659.4 623 56.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 8.0e-187 657.9 603 58.5
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.0e-186 656.0 634 54.4
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 4.0e-186 655.6 645 55.8
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 4.0e-186 655.6 622 56.8
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 6.7e-186 654.8 624 56.2
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.7e-185 651.0 642 54.0
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.2e-184 649.8 567 59.3
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.8e-184 649.4 498 67.3
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 8.2e-184 647.9 640 53.6
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.1e-183 647.5 657 53.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.4e-183 646.4 642 55.0
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.6e-182 643.7 641 53.4
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.5e-182 642.5 660 53.6
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.9e-182 641.7 627 55.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 4.2e-180 635.6 617 55.4
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 3.4e-177 625.9 649 51.2
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.4e-177 625.9 653 52.2
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.5e-177 624.8 712 49.9
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.8e-177 624.4 627 52.6
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.7e-176 623.6 628 53.2
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 2.4e-175 619.8 505 63.6
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.9e-174 615.1 651 52.7
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 2.3e-173 613.2 641 52.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.6e-171 605.9 624 52.4
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.3e-170 603.2 637 51.5
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-169 600.1 635 50.9
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.2e-168 596.7 581 56.6
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 8.3e-168 594.7 577 56.2
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.4e-167 594.0 610 53.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 5.4e-167 592.0 638 50.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.8e-165 585.9 643 50.4
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.5e-164 583.9 653 48.9
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.9e-164 583.6 637 50.2
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.9e-164 583.6 644 50.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 4.3e-164 582.4 648 48.9
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.8e-163 579.7 652 48.6
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.0e-162 577.8 643 48.7
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.0e-162 575.9 562 54.6
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 8.9e-162 574.7 633 50.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 8.9e-162 574.7 580 52.2
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.2e-161 574.3 561 52.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.6e-161 573.2 647 50.4
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 2.6e-161 573.2 525 59.4
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 4.4e-161 572.4 630 50.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 4.4e-161 572.4 630 50.0
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.4e-161 572.4 556 56.1
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.3e-160 570.9 630 49.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.2e-160 570.1 653 48.4
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 6.4e-160 568.5 587 51.6
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-159 567.0 630 48.9
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.8e-159 567.0 630 48.9
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.4e-159 566.6 653 48.2
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.6e-158 563.9 642 49.5
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.7e-158 563.1 646 48.5
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.7e-158 563.1 643 49.0
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 3.5e-158 562.8 652 48.5
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 8.6e-157 558.1 698 46.1
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 1.6e-155 553.9 556 54.1
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.7e-155 552.4 607 49.4
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.8e-154 550.4 625 48.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 5.8e-153 545.4 691 45.7
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 9.2e-151 538.1 651 47.3
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.2e-150 537.7 482 56.8
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.7e-150 536.6 508 55.7
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.9e-148 530.4 509 57.0
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.6e-147 527.3 525 53.0
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.8e-146 523.9 590 49.3
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.5e-145 520.8 512 52.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.2e-143 513.1 622 49.2
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.1e-140 504.6 531 53.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.5e-140 504.2 676 43.6
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.8e-131 473.4 424 56.1
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.0e-122 443.0 514 48.2
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.9e-119 434.1 471 51.8
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.9e-119 434.1 471 51.8
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.2e-118 431.4 550 45.5
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.0e-117 428.3 618 42.9
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.0e-117 426.8 620 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.4e-114 417.9 506 45.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 9.0e-114 415.2 702 37.7
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 9.3e-111 405.2 475 47.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.9e-108 397.5 622 40.5
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.2e-103 379.8 391 51.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.6e-99 367.9 498 43.0
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.6e-76 290.8 552 34.8
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 9.4e-71 272.3 513 35.7
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.5e-60 236.1 365 40.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.4e-58 231.1 291 47.8
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.7e-52 209.9 167 58.7
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.2e-46 192.2 195 46.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 5.4e-42 176.8 129 63.6
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.4e-26 125.6 158 40.5
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 6.2e-22 110.2 64 78.1
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.0e-20 105.1 156 42.9
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 5.3e-13 80.5 122 40.2
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-09 67.4 39 71.8
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 4.8e-06 57.4 55 45.5


User provided reference genes

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