Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.7e-157 558.1 278 100.0
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.4e-102 375.6 275 68.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 6.4e-101 371.3 274 68.2
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.4e-100 370.2 233 77.7
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.9e-100 369.8 273 68.1
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.1e-99 366.3 272 66.5
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 4.6e-99 365.2 275 67.6
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.0e-98 362.5 266 66.9
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.0e-98 362.5 277 68.6
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.9e-98 362.1 233 76.8
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 5.1e-98 361.7 272 67.3
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.1e-97 360.5 266 66.9
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.9e-97 359.8 272 67.3
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.9e-97 359.8 275 66.5
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 2.5e-97 359.4 273 67.4
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 3.3e-97 359.0 269 67.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 4.3e-97 358.6 274 64.6
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 9.6e-97 357.5 279 64.9
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.6e-96 356.7 270 64.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.1e-96 356.3 269 66.9
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.8e-96 355.9 272 65.1
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.8e-96 355.1 274 65.0
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 6.2e-96 354.8 271 63.8
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 6.2e-96 354.8 247 71.3
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.1e-95 354.0 275 63.6
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.4e-95 353.6 274 63.5
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.4e-95 353.6 273 64.1
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.3e-95 351.7 274 65.0
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.6e-94 349.4 274 64.2
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 5.8e-94 348.2 272 63.6
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 5.8e-94 348.2 261 65.9
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 7.6e-94 347.8 272 64.3
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.9e-94 347.4 274 63.5
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 9.9e-94 347.4 272 64.3
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 9.9e-94 347.4 272 63.2
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 9.9e-94 347.4 266 64.3
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.3e-93 347.1 272 63.2
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 2.2e-93 346.3 272 62.5
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.8e-93 345.5 271 62.7
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 4.9e-93 345.1 274 63.5
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 4.9e-93 345.1 271 64.2
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 1.4e-92 343.6 250 67.6
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.9e-92 343.2 271 62.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 3.2e-92 342.4 275 62.2
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 3.2e-92 342.4 268 63.1
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 4.2e-92 342.0 274 63.1
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 5.4e-92 341.7 274 62.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 7.1e-92 341.3 237 70.0
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 9.3e-92 340.9 272 62.1
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.2e-91 340.5 272 62.1
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 1.2e-91 340.5 232 71.1
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.6e-91 340.1 271 63.5
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.6e-91 340.1 232 71.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 2.1e-91 339.7 213 75.6
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.1e-91 339.7 272 64.7
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.0e-91 338.2 249 66.3
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 6.0e-91 338.2 237 68.8
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.3e-90 337.0 203 78.3
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.3e-90 337.0 232 70.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.3e-90 337.0 276 61.2
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.8e-90 336.7 249 67.1
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 5.1e-90 335.1 232 70.3
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.5e-89 333.6 234 71.4
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.5e-89 333.6 272 62.9
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.5e-89 332.8 271 60.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 2.5e-89 332.8 205 76.6
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.4e-89 331.3 249 67.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 9.6e-89 330.9 234 67.9
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.6e-88 330.1 231 69.7
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 2.1e-88 329.7 270 61.1
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.7e-88 328.9 274 59.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.8e-88 328.6 274 59.1
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 4.8e-88 328.6 209 73.7
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 4.8e-88 328.6 206 74.8
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 4.8e-88 328.6 273 60.1
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.1e-87 327.4 203 76.8
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.1e-87 327.4 272 59.9
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 1.4e-87 327.0 271 59.4
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.8e-87 326.6 275 61.5
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.4e-87 326.2 210 72.4
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 3.1e-87 325.9 230 66.5
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.0e-87 325.5 274 59.1
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.0e-86 323.2 234 68.4
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 4.5e-86 322.0 274 60.9
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.5e-86 322.0 227 67.8
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 9.9e-86 320.9 276 60.1
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 9.9e-86 320.9 207 73.4
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.3e-85 320.5 210 71.0
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.7e-85 320.1 254 63.0
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.2e-85 319.7 232 67.2
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.8e-85 318.9 272 60.7
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 4.9e-85 318.5 207 72.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.4e-85 318.2 206 77.2
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.4e-84 317.0 249 63.9
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.4e-84 317.0 247 64.0
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.9e-84 316.6 244 63.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 3.2e-84 315.8 207 72.0
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.6e-83 313.5 272 59.6
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 2.7e-83 312.8 203 73.4
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 7.9e-83 311.2 211 70.6
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.3e-82 310.5 271 61.3
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.8e-82 310.1 250 62.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.0e-82 309.3 271 61.3
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.3e-81 305.4 245 62.4
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 3.1e-79 299.3 208 68.8
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 5.8e-78 295.0 209 67.9
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 4.9e-77 292.0 213 64.3
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 1.1e-76 290.8 202 69.3
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.7e-75 286.2 194 71.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.3e-74 283.1 236 61.0
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.8e-72 275.4 216 62.0
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 8.2e-72 274.6 236 58.5
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 6.9e-71 271.6 217 62.2
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 7.7e-70 268.1 214 65.0
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.9e-69 266.2 236 54.2
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.7e-61 240.4 196 64.3
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 4.2e-60 235.7 208 56.2
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 5.5e-60 235.3 220 51.8
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.7e-59 232.3 180 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.2e-54 217.6 205 51.2
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.5e-54 217.2 200 55.0
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 2.6e-54 216.5 230 51.7
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.5e-52 209.9 212 50.9
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 4.7e-51 205.7 119 80.7
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 6.1e-51 205.3 246 41.9
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 3.9e-50 202.6 200 55.0
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.6e-46 189.9 244 38.5
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.0e-42 176.4 109 75.2
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 8.8e-42 174.9 218 43.1
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.7e-32 142.9 130 60.8
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 4.8e-32 142.5 122 58.2
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.9e-28 130.6 139 49.6
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.3e-26 123.6 91 64.8
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.4e-23 114.4 88 63.6
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 9.5e-20 101.7 153 37.9
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 3.1e-18 96.7 62 77.4
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.6e-14 84.3 110 42.7
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 5.6e-12 75.9 241 32.4
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.2e-09 68.2 58 62.1
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 5.8e-09 65.9 60 58.3


User provided reference genes

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