Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 0.0e+00 1089.7 528 100.0
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.3e-221 771.2 528 69.5
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.1e-213 746.9 524 69.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.9e-213 744.2 506 70.4
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.7e-211 739.6 511 69.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.2e-211 739.2 525 68.6
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.2e-210 735.3 460 73.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.9e-208 728.4 481 73.6
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 6.7e-208 727.6 508 68.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.5e-207 726.5 524 67.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 2.5e-207 725.7 519 67.6
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.3e-207 724.9 525 66.7
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 3.7e-206 721.8 502 69.3
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 8.2e-206 720.7 488 68.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.4e-205 719.9 515 68.0
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.4e-205 719.9 498 69.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 5.3e-205 718.0 500 68.4
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.3e-205 718.0 485 70.3
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.2e-204 716.8 528 65.5
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.5e-204 716.5 546 64.1
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.9e-204 714.5 529 65.2
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.7e-203 713.0 501 67.7
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.4e-202 709.9 501 68.1
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.2e-202 708.8 518 65.8
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.2e-202 708.8 494 68.4
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.2e-202 708.4 507 67.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-201 706.8 505 66.1
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.6e-201 706.4 494 68.8
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 6.1e-201 704.5 508 64.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 6.1e-201 704.5 498 68.9
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.1e-201 704.5 487 68.8
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.0e-200 703.7 508 64.2
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.8e-200 703.0 487 68.8
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.0e-200 702.2 498 68.7
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.5e-199 699.9 509 65.8
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.0e-199 699.5 528 63.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.0e-199 699.5 461 71.4
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 2.0e-199 699.5 482 69.1
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.6e-199 699.1 522 65.5
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 4.4e-199 698.4 490 67.6
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.4e-199 697.6 508 63.8
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 7.4e-199 697.6 519 63.8
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 9.7e-199 697.2 478 68.8
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.3e-198 696.8 490 66.9
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.3e-198 696.8 490 66.9
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.7e-198 696.4 510 65.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.7e-198 696.4 492 67.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.8e-198 695.7 487 66.3
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.8e-198 695.7 490 67.1
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.8e-198 695.7 507 66.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.7e-198 695.3 507 65.1
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 5.3e-197 691.4 454 73.6
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 7.0e-197 691.0 478 67.8
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.2e-196 690.3 497 65.8
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 4.5e-196 688.3 500 65.6
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.9e-196 688.0 434 73.7
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 5.9e-196 688.0 478 69.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 6.5e-195 684.5 490 66.1
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 8.5e-195 684.1 495 64.4
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-194 682.9 509 66.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 5.5e-194 681.4 511 64.4
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 9.4e-194 680.6 495 65.7
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.6e-193 679.9 493 65.5
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.7e-193 679.1 497 65.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 6.1e-193 677.9 500 64.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 8.0e-193 677.6 523 63.5
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.8e-192 676.4 508 64.6
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.9e-192 675.2 523 62.7
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.9e-192 675.2 562 61.4
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 6.7e-192 674.5 518 63.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 8.8e-192 674.1 513 65.5
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.5e-191 673.3 493 64.3
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 2.0e-191 672.9 505 63.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.0e-191 672.9 599 56.1
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.2e-190 669.5 495 64.4
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.7e-190 668.7 503 63.4
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 6.3e-190 667.9 478 66.9
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.4e-189 666.8 539 60.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.8e-189 666.4 501 65.1
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 9.1e-189 664.1 506 61.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.6e-188 662.5 492 64.8
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.9e-187 659.1 410 73.9
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.9e-187 659.1 493 64.3
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.8e-187 658.7 522 62.6
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 5.0e-187 658.3 506 61.3
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 6.5e-187 657.9 506 60.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.7e-185 652.5 502 62.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.7e-185 652.5 509 62.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 8.0e-185 651.0 522 60.3
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 8.0e-185 651.0 506 60.9
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 8.0e-185 651.0 455 70.1
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.4e-184 650.2 509 61.5
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.0e-184 648.7 493 61.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.0e-184 648.7 501 60.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.5e-183 646.7 509 61.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.6e-183 646.0 505 60.8
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.7e-183 644.0 379 77.8
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 4.8e-182 641.7 499 63.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.4e-181 640.2 504 59.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.1e-181 638.6 495 62.8
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.0e-180 636.3 516 60.7
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 2.7e-180 636.0 496 60.9
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.9e-179 632.5 504 58.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.8e-179 632.1 665 51.7
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 8.5e-179 630.9 510 59.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 4.2e-178 628.6 506 59.3
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.2e-178 628.6 482 60.6
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 7.2e-178 627.9 492 60.2
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.2e-177 627.1 492 60.2
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.2e-177 627.1 506 59.3
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.4e-176 623.6 505 58.4
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-176 623.6 505 58.4
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.4e-176 623.6 505 58.4
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.8e-176 623.2 494 61.9
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.0e-176 622.1 533 59.3
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.4e-175 619.0 488 62.1
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.7e-174 616.7 607 51.9
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 6.3e-174 614.8 521 58.5
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 8.3e-174 614.4 496 58.9
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.1e-173 614.0 523 57.7
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-173 613.6 499 59.3
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 5.4e-173 611.7 501 60.7
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 7.7e-172 607.8 448 63.8
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.8e-168 596.7 502 57.8
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 4.0e-168 595.5 545 56.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 7.5e-167 591.3 416 64.7
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 2.8e-166 589.3 456 62.3
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.1e-162 577.4 530 55.8
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.9e-162 576.6 454 61.9
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 4.7e-161 572.0 415 66.0
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.4e-158 561.6 511 55.4
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.7e-156 556.2 452 61.1
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.5e-154 549.7 515 55.5
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 7.5e-151 538.1 530 52.1
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.9e-142 508.8 375 66.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.6e-140 502.3 367 68.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.3e-138 496.1 437 57.2
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.1e-137 491.5 464 55.4
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 3.5e-132 476.1 527 44.8
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 5.8e-127 458.8 446 49.3
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 7.6e-127 458.4 472 50.0
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.6e-121 439.5 401 51.6
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 5.8e-111 405.6 328 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.5e-106 391.0 554 40.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.3e-104 382.5 296 65.2
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.7e-92 343.6 320 54.7
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.0e-83 315.1 199 71.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.0e-71 274.2 214 64.5
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 8.6e-54 215.7 242 48.3
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.3e-51 207.6 160 63.1
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 9.8e-42 175.6 101 79.2
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.2e-39 168.7 329 34.0
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 8.6e-38 162.5 149 58.4
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 2.8e-36 157.5 106 66.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 3.2e-32 144.1 112 64.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 5.4e-32 143.3 113 57.5
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 5.4e-32 143.3 112 64.3
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.1e-31 141.4 404 28.5
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.6e-28 130.6 86 67.4
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 8.9e-27 125.9 81 69.1
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 9.9e-26 122.5 99 57.6
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 7.1e-24 116.3 71 74.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 7.3e-21 106.3 95 49.5
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.1e-20 104.8 62 77.4
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-20 104.4 114 55.3
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 8.4e-17 92.8 67 70.1
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.3e-13 80.9 85 54.1
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.9e-11 73.2 45 73.3
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.7e-09 68.6 43 72.1
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 6.4e-09 66.6 105 40.0
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 2.4e-08 64.7 105 39.0
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 1.3e-06 58.9 38 55.3
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 2.3e-06 58.2 53 56.6
MELO3C001761.2 Cucumis melo HOM05D003877 ORTHO05D034944 3.0e-06 57.8 37 73.0


User provided reference genes

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