Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 2.0e-115 419.1 205 100.0
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 3.7e-45 185.7 194 52.6
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 1.8e-44 183.3 182 53.3
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 5.0e-42 175.3 193 53.4
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 8.5e-42 174.5 169 56.2
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 2.7e-40 169.5 188 52.1
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.1e-38 164.1 193 52.8
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 3.3e-38 162.5 155 56.8
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 5.7e-38 161.8 200 51.5
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 1.6e-35 153.7 170 51.2
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 2.0e-35 153.3 198 48.5
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 4.5e-35 152.1 189 48.1
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 5.0e-34 148.7 152 55.3
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 2.5e-33 146.4 195 46.2
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 9.4e-33 144.4 199 45.2
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 9.4e-33 144.4 154 53.2
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 2.7e-32 142.9 155 54.8
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 3.6e-32 142.5 162 51.2
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 8.0e-32 141.4 166 52.4
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 8.0e-32 141.4 157 52.9
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 1.4e-31 140.6 165 52.1
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 1.8e-31 140.2 158 53.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 6.7e-31 138.3 154 51.3
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 9.7e-30 134.4 183 45.4
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 9.7e-30 134.4 183 45.4
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 1.7e-29 133.7 178 49.4
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 2.2e-29 133.3 164 48.2
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 2.2e-29 133.3 160 50.0
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 3.7e-29 132.5 164 49.4
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 3.7e-29 132.5 210 41.4
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 4.8e-29 132.1 180 45.6
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.4e-28 130.6 165 50.9
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 1.8e-28 130.2 180 48.9
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 2.4e-28 129.8 158 50.6
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 2.4e-28 129.8 144 53.5
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 3.1e-28 129.4 131 58.0
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.6e-27 127.1 152 51.3
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 2.7e-27 126.3 195 43.1
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 1.0e-26 124.4 148 49.3
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 1.7e-26 123.6 194 44.3
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 2.9e-26 122.9 159 48.4
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 8.5e-26 121.3 183 42.6
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 8.5e-26 121.3 162 46.9
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 1.5e-25 120.6 156 45.5
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 4.2e-25 119.0 153 45.1
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 9.4e-25 117.9 153 44.4
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 1.2e-24 117.5 186 44.6
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 1.6e-24 117.1 115 53.0
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 1.4e-23 114.0 186 40.3
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 1.4e-23 114.0 159 48.4
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.8e-23 113.6 181 41.4
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 1.8e-23 113.6 187 43.3
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 3.0e-23 112.8 160 42.5
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 3.0e-23 112.8 200 38.5
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 4.0e-23 112.5 180 41.1
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 8.8e-23 111.3 181 40.3
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 1.2e-22 110.9 161 43.5
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 1.5e-22 110.5 160 42.5
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 2.6e-22 109.8 170 43.5
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 2.6e-22 109.8 185 38.9
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 7.5e-22 108.2 185 38.9
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 1.3e-21 107.5 128 49.2
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.7e-21 107.1 178 39.9
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.7e-21 107.1 189 38.1
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.7e-21 105.9 150 45.3
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 4.8e-21 105.5 170 41.2
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 7.0e-20 101.7 181 38.7
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 9.1e-20 101.3 189 37.6
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 1.6e-19 100.5 145 41.4
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 1.7e-18 97.1 157 40.1
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 1.1e-17 94.4 203 37.9
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 1.9e-17 93.6 153 41.2
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 3.2e-17 92.8 150 38.0
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 4.2e-17 92.4 140 40.7
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 2.1e-16 90.1 84 56.0
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 8.0e-16 88.2 189 34.9
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 2.6e-14 83.2 87 54.0
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 3.4e-14 82.8 83 51.8
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 1.4e-12 77.4 193 31.6
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 4.1e-12 75.9 81 49.4
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.7e-11 73.2 184 30.4
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 3.5e-11 72.8 159 33.3
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 7.8e-11 71.6 181 28.2
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 7.8e-11 71.6 72 50.0
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 1.0e-10 71.2 171 29.8
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 1.3e-10 70.9 134 35.8
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.7e-10 70.5 128 35.9
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.7e-10 70.5 195 29.7
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 1.7e-10 70.5 185 28.1
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 1.7e-10 70.5 187 28.9
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 2.3e-10 70.1 155 30.3
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 2.9e-10 69.7 155 30.3
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.8e-10 69.3 56 64.3
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 3.8e-10 69.3 191 29.3
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 5.0e-10 68.9 171 29.8
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 6.6e-10 68.6 178 29.8
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.9e-09 67.0 207 29.5
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.9e-09 67.0 77 48.1
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 2.5e-09 66.6 144 29.9
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 2.5e-09 66.6 196 27.0
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 3.3e-09 66.2 159 27.0
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 3.3e-09 66.2 169 29.0
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 4.3e-09 65.9 157 30.6
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 5.6e-09 65.5 183 29.0
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 5.6e-09 65.5 198 31.3
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 5.6e-09 65.5 186 30.1
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 5.6e-09 65.5 169 29.0
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 9.5e-09 64.7 194 26.3
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 9.5e-09 64.7 182 28.0
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.2e-08 64.3 207 28.5
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 1.6e-08 63.9 194 28.9
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 2.1e-08 63.5 173 27.7
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 2.8e-08 63.2 185 29.2
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.8e-08 63.2 195 27.2
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 3.6e-08 62.8 190 26.8
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 3.6e-08 62.8 160 30.0
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 4.7e-08 62.4 164 28.7
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 4.7e-08 62.4 164 28.7
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 6.1e-08 62.0 176 27.8
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 6.1e-08 62.0 173 25.4
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 6.1e-08 62.0 173 25.4
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 6.1e-08 62.0 181 28.7
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 6.1e-08 62.0 183 28.4
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 8.0e-08 61.6 163 26.4
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 8.0e-08 61.6 199 26.6
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.0e-07 61.2 173 28.3
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 1.0e-07 61.2 212 26.4
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 1.0e-07 61.2 190 30.0
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 1.4e-07 60.8 182 28.6
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 1.4e-07 60.8 174 29.3
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 1.4e-07 60.8 185 27.0
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 1.4e-07 60.8 171 29.2
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 1.8e-07 60.5 174 27.0
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 2.3e-07 60.1 187 26.2
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 2.3e-07 60.1 184 30.4
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 2.3e-07 60.1 199 28.1
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 3.0e-07 59.7 190 28.9
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 3.0e-07 59.7 191 26.7
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 3.0e-07 59.7 166 32.5
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 3.0e-07 59.7 178 27.0
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 3.0e-07 59.7 191 27.7
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 3.0e-07 59.7 168 26.8
QL01p000468 Quercus lobata HOM05D000727 ORTHO05D000541 3.0e-07 59.7 201 26.4
QL01p000554 Quercus lobata HOM05D000727 ORTHO05D000541 3.0e-07 59.7 201 26.4
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 3.0e-07 59.7 179 29.1
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 4.0e-07 59.3 214 26.2
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 4.0e-07 59.3 197 28.4
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 4.0e-07 59.3 196 27.6
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 4.0e-07 59.3 136 33.1
BolC2t12139H Brassica oleracea HOM05D000727 ORTHO05D000541 5.2e-07 58.9 182 26.9
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 5.2e-07 58.9 184 28.3
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 6.8e-07 58.5 175 29.1
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 6.8e-07 58.5 157 29.3
C02p60870 Brassica napus HOM05D000727 ORTHO05D000541 6.8e-07 58.5 183 28.4
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 6.8e-07 58.5 190 26.3
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 6.8e-07 58.5 180 27.8
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 6.8e-07 58.5 204 27.5
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 8.9e-07 58.2 194 28.9
Pp3c17_7580 Physcomitrium patens HOM05D000727 ORTHO05D000541 8.9e-07 58.2 185 27.0
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 1.2e-06 57.8 187 26.7
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 1.2e-06 57.8 171 27.5
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 1.2e-06 57.8 218 27.1
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.5e-06 57.4 172 27.9
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 1.5e-06 57.4 178 27.0
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 2.0e-06 57.0 185 28.6
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 2.0e-06 57.0 181 28.2
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 2.0e-06 57.0 187 28.9
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 2.0e-06 57.0 171 28.1
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.0e-06 57.0 175 28.0
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 2.6e-06 56.6 195 27.7
Lalb_Chr06g0164361 Lupinus albus HOM05D000727 ORTHO05D000541 2.6e-06 56.6 152 30.9
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 2.6e-06 56.6 173 26.0
CARHR190090 Cardamine hirsuta HOM05D000727 ORTHO05D000541 4.4e-06 55.8 189 27.5
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 5.7e-06 55.5 170 28.2
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 7.5e-06 55.1 188 26.1
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 7.5e-06 55.1 196 25.5
MBI19_g06976_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 7.5e-06 55.1 59 47.5
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 7.5e-06 55.1 182 28.0
AagrBONN_evm.TU.Sc2ySwM_228.5706 Anthoceros agrestis HOM05D000727 ORTHO05D000541 9.8e-06 54.7 167 25.7


User provided reference genes

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