Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 7.0e-279 963.4 512 100.0
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 5.5e-199 698.0 510 75.3
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 1.8e-197 693.0 497 74.8
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 1.5e-196 689.9 526 71.5
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 5.7e-196 688.0 511 73.4
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 4.8e-195 684.9 500 74.6
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 6.3e-195 684.5 512 72.5
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 8.2e-195 684.1 497 74.4
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 1.4e-194 683.3 511 73.0
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 7.7e-193 677.6 511 72.6
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 5.0e-192 674.9 510 73.3
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 3.6e-190 668.7 507 72.6
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.3e-187 660.2 497 72.4
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 9.1e-186 654.1 503 71.0
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 4.5e-185 651.7 503 71.8
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 1.7e-184 649.8 503 70.8
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 6.5e-184 647.9 506 71.1
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 1.5e-183 646.7 505 71.3
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 2.5e-183 646.0 496 71.0
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 3.2e-183 645.6 502 69.5
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 5.5e-183 644.8 497 70.2
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 6.1e-182 641.3 506 70.6
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.5e-180 636.7 501 69.9
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 4.4e-180 635.2 508 67.5
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 7.5e-180 634.4 502 69.3
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 4.9e-179 631.7 501 69.3
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 1.8e-178 629.8 497 68.4
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 1.6e-177 626.7 504 70.2
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 1.3e-176 623.6 501 69.5
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 9.5e-175 617.5 497 67.0
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 1.2e-174 617.1 509 66.6
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 6.8e-173 611.3 497 68.4
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 1.2e-172 610.5 475 69.7
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 7.5e-172 607.8 503 66.8
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 7.5e-172 607.8 503 66.8
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 9.8e-172 607.4 515 67.2
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 1.7e-171 606.7 503 66.4
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 4.9e-171 605.1 501 67.1
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 1.4e-170 603.6 496 68.5
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.8e-170 603.2 505 66.9
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 4.1e-170 602.1 499 67.3
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 5.4e-170 601.7 502 67.1
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 9.2e-170 600.9 505 66.5
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 1.6e-169 600.1 497 66.8
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 2.0e-169 599.7 497 67.4
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 7.8e-169 597.8 496 67.7
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 1.3e-168 597.0 491 67.2
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 1.7e-168 596.7 500 66.8
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 2.3e-168 596.3 506 65.0
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 3.9e-168 595.5 499 65.9
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 5.0e-168 595.1 500 67.2
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 8.6e-168 594.3 508 65.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.1e-167 594.0 498 69.3
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 2.5e-167 592.8 499 66.3
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 1.2e-166 590.5 499 65.7
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 8.0e-166 587.8 504 65.3
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 1.0e-165 587.4 509 65.6
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 1.0e-165 587.4 569 61.5
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 1.0e-165 587.4 495 65.9
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 6.4e-163 578.2 496 64.3
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 2.4e-162 576.2 496 64.3
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 3.5e-161 572.4 442 73.3
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 5.6e-159 565.1 529 60.7
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 4.7e-158 562.0 404 76.7
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 4.0e-157 558.9 489 65.4
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 6.8e-157 558.1 504 64.1
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 7.5e-156 554.7 459 69.1
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.3e-155 553.9 500 63.4
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 2.2e-155 553.1 464 68.1
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 8.3e-155 551.2 518 60.2
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 2.7e-153 546.2 501 63.3
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 6.0e-153 545.0 510 60.8
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 6.0e-153 545.0 501 61.3
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 1.0e-152 544.3 503 60.8
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 5.1e-152 542.0 478 65.7
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 8.4e-147 524.6 550 57.1
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 9.6e-143 511.1 456 64.0
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.1e-142 510.0 521 57.6
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 8.1e-142 508.1 464 63.1
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.4e-141 507.3 452 64.4
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 9.9e-140 501.1 475 61.1
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 1.4e-138 497.3 493 59.4
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 1.9e-138 496.9 470 60.0
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 5.4e-138 495.4 414 68.1
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 1.4e-130 470.7 432 62.5
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 1.3e-126 457.6 376 66.5
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 7.4e-119 431.8 366 65.8
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 1.1e-111 407.9 364 64.3
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.5e-100 370.9 499 49.5
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 5.5e-98 362.5 499 45.5
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 2.8e-94 350.1 424 51.2
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 5.0e-91 339.3 299 63.5
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 7.2e-90 335.5 298 64.4
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 3.7e-86 323.2 256 69.1
Nitab4.5_0000109g0530 Nicotiana tabacum HOM05D006817 ORTHO05D008603 2.1e-73 280.8 245 65.3
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.5e-71 274.6 254 62.2
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 2.1e-65 254.2 228 59.6
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 2.6e-63 247.3 248 60.1
MSTRG.24128 Avicennia marina HOM05D006817 ORTHO05D008603 1.4e-61 241.5 152 82.2
RcHm_v2.0_Chr1g0371881 Rosa chinensis HOM05D006817 ORTHO05D008603 2.3e-59 234.2 167 72.5
VMungo0647G0650 Vigna mungo HOM05D006817 ORTHO05D008603 2.1e-57 227.6 205 61.0
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 2.0e-52 211.1 167 70.1
MD07G1231800 Malus domestica HOM05D006817 ORTHO05D008603 2.1e-49 201.1 138 75.4
Oeu020109.1 Olea europaea HOM05D006817 ORTHO05D008603 1.3e-43 181.8 169 61.5
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 4.0e-40 170.2 138 69.6
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 1.6e-36 158.3 159 54.7
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 1.9e-34 151.4 506 29.2
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 2.2e-30 137.9 93 81.7
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 2.9e-30 137.5 95 80.0
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-27 127.5 93 77.4
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 3.3e-26 124.0 89 74.2
Hund15836 Selenicereus undatus HOM05D006817 ORTHO05D008603 5.6e-26 123.2 72 87.5
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.9e-22 110.9 99 61.6
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.5e-20 104.0 77 70.1
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 1.3e-19 102.1 74 75.7
QL08p064573 Quercus lobata HOM05D006817 ORTHO05D008603 3.1e-16 90.9 62 69.4
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 9.9e-15 85.9 73 69.9
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 1.8e-11 75.1 57 70.2
PGSC0003DMG400024308 Solanum tuberosum HOM05D006817 ORTHO05D008603 1.1e-08 65.9 56 60.7
Prupe.2G262300 Prunus persica HOM05D006817 ORTHO05D008603 3.4e-07 60.8 90 50.0


User provided reference genes

Program Settings