Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 0.0e+00 1181.0 593 100.0
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 3.7e-255 884.8 600 73.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 5.9e-253 877.5 596 73.3
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.7e-242 842.0 670 64.9
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.5e-240 836.3 598 70.9
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.6e-240 835.5 598 70.6
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.7e-239 832.8 596 70.6
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.8e-239 832.0 670 64.5
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.1e-238 830.1 595 70.9
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 5.0e-236 821.2 600 68.3
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 9.4e-235 817.0 592 68.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.8e-233 812.8 593 68.0
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.8e-232 807.0 594 69.5
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 9.8e-232 807.0 596 68.5
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.3e-231 806.6 600 68.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.0e-230 800.8 595 66.1
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 4.5e-229 798.1 606 67.3
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.5e-227 792.3 596 66.9
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-226 789.6 594 68.7
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.0e-225 785.0 596 66.4
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 4.0e-225 785.0 628 64.3
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.6e-224 782.3 593 66.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.8e-224 780.4 592 66.2
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 2.2e-223 779.2 596 66.1
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 3.7e-223 778.5 593 65.6
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 8.3e-223 777.3 594 65.3
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 9.2e-222 773.9 597 66.0
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.0e-221 772.7 595 65.2
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 3.5e-221 771.9 595 64.4
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 3.5e-221 771.9 601 65.2
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 3.5e-221 771.9 635 62.2
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 5.9e-221 771.2 598 64.7
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.8e-220 768.5 593 65.1
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.1e-219 766.9 621 64.3
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.5e-219 766.5 594 64.3
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.9e-219 766.1 597 64.2
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.9e-219 766.1 593 65.8
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.5e-219 765.8 593 64.4
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.5e-219 765.8 596 64.9
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.2e-218 763.5 596 65.8
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 1.2e-218 763.5 594 63.8
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.0e-218 760.8 593 64.8
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 3.0e-217 758.8 596 63.1
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.2e-216 756.9 595 64.7
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.5e-216 756.5 598 63.4
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 2.0e-216 756.1 594 63.0
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 7.5e-216 754.2 592 64.7
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.7e-215 753.1 598 63.0
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 8.3e-215 750.7 594 64.5
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 8.3e-215 750.7 598 63.0
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.1e-214 750.4 598 62.7
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.0e-213 746.1 593 63.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 7.8e-213 744.2 594 62.8
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 7.8e-213 744.2 594 62.5
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.0e-212 743.8 594 63.3
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.3e-212 743.4 593 62.4
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.9e-211 739.6 596 63.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 5.6e-211 738.0 590 62.9
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 5.6e-211 738.0 530 69.6
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.6e-210 736.5 594 63.0
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 2.8e-210 735.7 592 62.5
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 3.6e-210 735.3 592 62.2
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 4.7e-210 734.9 592 61.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 4.7e-210 734.9 591 63.1
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 8.0e-210 734.2 608 61.5
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.1e-209 733.8 603 59.2
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 5.8e-208 728.0 603 58.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.7e-207 725.3 590 62.0
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.1e-206 723.8 595 61.3
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 9.2e-206 720.7 613 60.0
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.2e-205 720.3 595 62.9
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 4.6e-205 718.4 593 61.9
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 6.6e-204 714.5 597 60.8
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 8.6e-204 714.1 593 60.5
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 7.3e-203 711.1 597 60.5
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-202 709.9 577 64.1
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 2.8e-202 709.1 599 59.6
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 6.2e-202 708.0 590 59.7
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 9.9e-200 700.7 593 61.2
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 4.6e-197 691.8 596 59.6
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 3.0e-196 689.1 599 59.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 6.6e-196 688.0 596 59.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.1e-195 687.2 595 59.8
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 4.3e-195 685.3 558 62.2
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.6e-194 683.3 596 59.1
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 3.6e-194 682.2 600 57.5
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 4.7e-194 681.8 598 59.0
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 4.0e-193 678.7 564 61.9
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 6.8e-193 677.9 596 58.7
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.7e-191 673.3 596 58.6
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.7e-191 673.3 596 58.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 7.8e-189 664.5 596 57.6
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.3e-187 658.7 555 60.4
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.7e-183 646.7 503 65.4
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 6.4e-183 644.8 599 55.6
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 2.4e-182 642.9 594 57.2
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 2.1e-181 639.8 594 56.1
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 3.5e-181 639.0 594 56.9
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.5e-179 633.6 598 55.0
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 2.5e-179 632.9 599 54.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 2.1e-170 603.2 418 72.7
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 2.1e-170 603.2 601 54.6
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.2e-165 587.4 625 51.4
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-165 585.9 519 59.7
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 8.4e-159 564.7 586 50.7
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.1e-158 564.3 525 57.7
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 3.2e-158 562.8 525 57.5
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 2.8e-154 549.7 606 49.0
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 6.9e-153 545.0 466 59.7
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.5e-152 543.9 444 62.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 3.4e-144 516.2 542 52.4
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.6e-128 463.4 612 42.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.1e-121 439.5 578 43.6
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 9.1e-121 438.3 399 55.6
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 7.7e-120 435.3 599 42.4
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 6.3e-114 415.6 279 73.5
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.5e-112 409.5 594 41.9
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 3.3e-110 403.3 613 38.8
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 1.4e-108 397.9 250 79.2
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.9e-104 382.5 303 62.4
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 8.0e-101 372.1 410 52.0
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 5.2e-100 369.4 284 65.8
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 1.4e-97 361.3 629 36.9
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.7e-79 301.2 250 63.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.3e-79 300.8 429 43.8
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.9e-78 297.7 605 33.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 3.6e-77 293.5 459 41.2
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 9.9e-59 232.3 284 48.6
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.2e-58 231.1 287 47.4
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-55 221.5 150 70.0
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 9.6e-54 215.7 166 65.1
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.1e-49 202.2 565 30.3
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.7e-48 197.6 283 42.0
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 1.8e-44 184.9 141 58.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.5e-38 165.2 127 64.6
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 3.3e-38 164.1 134 61.2
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 5.0e-34 150.2 385 31.2
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.2e-32 145.6 115 62.6
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 4.8e-29 133.7 94 64.9
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.1e-28 131.0 143 43.4
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 5.9e-27 126.7 180 39.4
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.1e-24 118.2 83 72.3
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 6.1e-24 116.7 890 22.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 5.5e-17 93.6 106 47.2
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.3e-15 88.2 55 67.3
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 2.3e-15 88.2 105 46.7
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.8e-15 86.3 88 46.6
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 6.5e-10 70.1 60 56.7
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.1e-09 69.3 58 60.3
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.5e-09 68.9 42 73.8
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 7.2e-09 66.6 41 73.2
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.1e-08 65.1 41 73.2
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 3.6e-08 64.3 86 43.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 3.6e-08 64.3 86 43.0
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 9.7e-06 56.2 34 76.5


User provided reference genes

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