Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 3.9e-72 275.0 171 100.0
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.1e-54 216.1 169 81.1
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.1e-53 212.2 168 79.8
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 9.9e-52 207.2 168 76.2
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 2.2e-51 206.1 166 78.3
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 6.6e-48 194.5 169 77.5
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 9.6e-47 190.7 167 75.4
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 8.1e-46 187.6 168 72.6
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 8.1e-46 187.6 166 74.7
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.4e-45 186.8 160 74.4
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 2.2e-43 179.5 171 57.3
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.4e-42 176.0 168 68.5
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 5.4e-42 174.9 178 68.0
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 9.3e-42 174.1 169 69.8
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.6e-41 173.3 169 72.2
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.6e-41 173.3 172 57.6
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.7e-41 172.6 168 56.5
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.7e-41 172.6 178 60.7
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.5e-41 172.2 174 56.3
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.0e-40 170.6 171 62.0
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.3e-40 170.2 178 58.4
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.0e-40 169.1 170 69.4
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.9e-40 168.7 173 63.6
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 5.1e-40 168.3 167 70.7
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 5.1e-40 168.3 178 64.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 8.7e-40 167.5 169 55.6
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 1.9e-39 166.4 150 72.0
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.9e-39 166.4 179 64.8
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.9e-39 166.4 179 64.8
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.9e-39 166.4 179 60.9
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.5e-39 166.0 179 64.8
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.3e-39 165.2 170 53.5
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 4.3e-39 165.2 171 66.1
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 4.3e-39 165.2 168 53.6
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 4.3e-39 165.2 171 63.2
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.6e-39 164.9 170 51.8
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.3e-39 164.5 172 52.9
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 7.3e-39 164.5 175 54.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 9.6e-39 164.1 182 48.9
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 9.6e-39 164.1 172 53.5
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 1.3e-38 163.7 157 69.4
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.3e-38 163.7 169 55.0
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.6e-38 163.3 170 52.9
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.6e-38 163.3 170 65.3
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.6e-38 163.3 174 51.7
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.8e-38 162.5 172 52.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 3.6e-38 162.2 167 53.9
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 6.2e-38 161.4 168 70.2
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 6.2e-38 161.4 175 50.3
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 6.2e-38 161.4 183 50.8
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.4e-37 160.2 172 52.9
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.8e-37 159.8 169 51.5
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.8e-37 159.8 169 50.9
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 2.4e-37 159.5 164 54.9
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.3e-37 158.3 187 62.6
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 6.9e-37 157.9 169 53.3
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 9.0e-37 157.5 163 63.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.2e-36 157.1 171 52.0
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 2.0e-36 156.4 175 62.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 3.4e-36 155.6 169 50.3
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 3.4e-36 155.6 119 66.4
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 5.8e-36 154.8 160 65.6
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 9.9e-36 154.1 175 50.3
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.3e-35 153.7 168 51.2
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.7e-35 153.3 166 50.6
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 2.2e-35 152.9 169 49.7
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 6.4e-35 151.4 173 48.0
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 8.4e-35 151.0 167 67.1
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 1.1e-34 150.6 163 69.3
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.1e-34 150.6 176 63.6
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.9e-34 149.8 156 64.7
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 2.4e-34 149.4 168 60.7
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 4.2e-34 148.7 173 48.6
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 7.1e-34 147.9 173 48.6
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 9.3e-34 147.5 171 50.9
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.2e-33 147.1 172 50.6
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 3.5e-33 145.6 172 47.1
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.5e-33 145.6 173 48.0
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.6e-33 145.2 172 48.3
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 7.8e-33 144.4 167 47.3
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.0e-32 144.1 175 46.3
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.0e-32 144.1 164 48.2
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.7e-32 143.3 182 58.8
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 3.9e-32 142.1 175 45.7
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 5.1e-32 141.7 171 47.4
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 5.1e-32 141.7 185 45.4
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 8.7e-32 141.0 173 46.2
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 8.7e-32 141.0 173 46.8
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.5e-31 140.2 179 44.7
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.9e-31 139.8 174 46.0
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 2.5e-31 139.4 171 46.8
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 2.5e-31 139.4 171 46.8
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.3e-31 139.0 177 46.9
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.6e-31 138.3 168 48.8
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 5.6e-31 138.3 171 46.2
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.3e-30 137.1 171 49.7
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.8e-30 136.0 168 47.6
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 3.6e-30 135.6 162 47.5
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 8.1e-30 134.4 102 63.7
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 8.1e-30 134.4 118 75.4
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.8e-29 133.3 115 58.3
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 4.0e-29 132.1 106 79.2
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 6.9e-29 131.3 106 84.0
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.5e-28 130.2 168 49.4
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.0e-28 129.8 106 84.0
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.0e-28 129.8 162 45.1
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 5.8e-28 128.3 170 44.1
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 7.6e-28 127.9 177 42.9
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.2e-27 126.3 169 45.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 3.8e-27 125.6 172 44.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 6.4e-27 124.8 173 43.9
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.4e-26 123.6 174 43.1
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.2e-26 122.1 240 36.2
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 5.4e-26 121.7 167 43.1
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.2e-25 120.6 131 51.9
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 6.7e-24 114.8 113 54.0
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 6.7e-24 114.8 106 55.7
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 6.7e-24 114.8 180 48.3
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 2.5e-23 112.8 112 51.8
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 7.4e-23 111.3 106 53.8
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.4e-21 107.1 108 59.3
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 3.1e-21 105.9 187 40.1
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 3.1e-21 105.9 112 50.9
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.0e-21 105.5 131 45.8
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.6e-20 102.8 104 52.9
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 7.6e-20 101.3 111 51.4
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 1.0e-16 90.9 176 36.9
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 6.2e-14 81.6 169 33.1
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 6.2e-14 81.6 103 44.7
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 6.2e-14 81.6 103 44.7
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 1.1e-13 80.9 188 34.6
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 3.1e-13 79.3 97 46.4
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.9e-13 78.2 80 52.5
Nitab4.5_0001671g0020 Nicotiana tabacum HOM05D004876 ORTHO05D005488 5.8e-12 75.1 62 58.1
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 6.1e-09 65.1 106 43.4
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.0e-08 64.3 88 42.0
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 1.0e-08 64.3 66 93.9
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 6.7e-08 61.6 85 43.5


User provided reference genes

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