Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 3.0e-166 588.6 322 100.0
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 5.3e-107 391.7 324 64.8
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 6.9e-107 391.3 332 66.3
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 6.9e-107 391.3 325 64.3
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 3.4e-106 389.0 328 65.5
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 7.2e-104 381.3 329 71.1
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.1e-103 378.3 327 63.6
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 8.8e-102 374.4 327 70.0
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.6e-101 372.9 326 63.8
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 7.4e-101 371.3 322 63.7
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 8.5e-97 357.8 354 57.6
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 9.4e-96 354.4 353 60.6
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 2.1e-95 353.2 327 60.6
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 3.6e-95 352.4 338 60.7
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 1.7e-92 343.6 325 59.4
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 3.7e-92 342.4 326 64.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.1e-91 340.9 352 63.6
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 4.1e-91 339.0 337 59.9
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 7.0e-91 338.2 333 65.2
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 9.1e-91 337.8 325 60.3
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 2.7e-90 336.3 331 60.4
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.0e-89 334.3 354 55.1
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 1.3e-89 334.0 331 60.1
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 6.5e-89 331.6 340 55.3
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 8.5e-89 331.3 358 53.6
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 5.5e-88 328.6 340 65.3
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 7.2e-88 328.2 335 64.2
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 2.1e-87 326.6 328 58.8
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 1.2e-85 320.9 327 58.1
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 2.0e-85 320.1 362 52.5
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 2.2e-84 316.6 344 54.9
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 5.4e-83 312.0 324 56.8
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 7.0e-83 311.6 343 54.2
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 2.0e-82 310.1 331 61.0
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 2.0e-82 310.1 327 56.6
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 4.5e-82 308.9 348 58.0
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 2.9e-81 306.2 353 56.7
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.9e-81 306.2 324 56.5
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 2.9e-81 306.2 325 54.2
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 6.5e-81 305.1 359 51.5
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 3.2e-80 302.8 324 55.6
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 1.2e-79 300.8 331 61.3
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 3.6e-79 299.3 327 52.9
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 8.8e-78 294.7 337 54.0
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 2.6e-77 293.1 323 52.0
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 2.8e-76 289.7 331 52.0
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 3.7e-76 289.3 328 49.7
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 1.4e-75 287.3 336 51.5
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 1.4e-75 287.3 342 56.1
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.8e-75 287.0 328 50.9
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 4.1e-75 285.8 353 55.8
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 3.5e-74 282.7 331 49.8
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 3.5e-74 282.7 323 49.2
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 2.9e-73 279.6 341 54.5
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 3.8e-73 279.3 337 50.1
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.1e-71 273.5 335 51.0
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 2.8e-71 273.1 330 48.8
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.6e-71 272.7 344 51.2
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 8.0e-71 271.6 343 49.6
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 1.4e-70 270.8 337 52.8
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 2.3e-70 270.0 338 46.7
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 2.4e-67 260.0 327 53.5
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.2e-66 257.7 335 50.7
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 2.7e-66 256.5 328 50.3
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 2.7e-66 256.5 303 47.2
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 2.3e-65 253.4 329 57.1
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 8.6e-65 251.5 340 49.4
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.9e-64 250.4 366 42.6
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 2.5e-64 250.0 329 47.7
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 8.0e-63 245.0 315 46.0
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 4.0e-62 242.7 343 43.1
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 5.2e-62 242.3 351 43.9
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.5e-61 240.7 334 45.2
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.5e-61 240.7 368 44.0
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 1.5e-61 240.7 358 45.0
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 3.4e-61 239.6 334 44.9
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 5.8e-61 238.8 351 45.9
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.3e-60 237.7 310 45.5
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.7e-58 229.9 300 46.7
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 4.6e-58 229.2 156 68.6
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 7.8e-58 228.4 314 48.1
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 2.3e-57 226.9 149 73.8
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 6.2e-55 218.8 262 51.5
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 1.2e-53 214.5 323 40.6
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 1.2e-53 214.5 329 44.1
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 3.4e-53 213.0 328 42.7
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 7.1e-51 205.3 323 39.6
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 1.0e-49 201.4 151 60.9
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 3.9e-49 199.5 274 53.3
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 5.1e-49 199.1 335 42.4
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 1.5e-48 197.6 126 71.4
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 1.9e-48 197.2 335 43.6
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 2.5e-48 196.8 331 41.4
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 7.3e-48 195.3 167 59.3
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 1.2e-47 194.5 160 61.2
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 3.6e-47 193.0 356 41.0
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 8.1e-47 191.8 355 36.3
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 1.4e-46 191.0 353 44.2
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 1.8e-46 190.7 353 44.2
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 8.9e-46 188.3 122 74.6
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 3.4e-45 186.4 330 40.9
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 5.8e-45 185.7 181 52.5
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 2.9e-44 183.3 182 52.2
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 1.1e-43 181.4 219 49.3
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 2.4e-43 180.3 350 39.4
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 3.2e-43 179.9 212 49.5
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 7.8e-42 175.3 218 46.8
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 2.8e-39 166.8 222 44.6
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 2.8e-39 166.8 222 44.6
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 8.1e-39 165.2 227 43.2
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 3.1e-38 163.3 268 41.4
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 1.2e-37 161.4 346 35.0
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 2.9e-36 156.8 235 42.1
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 3.1e-30 136.7 108 63.9
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 3.8e-28 129.8 160 45.6
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 3.8e-28 129.8 160 45.6
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 3.9e-25 119.8 213 37.1
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 3.9e-25 119.8 158 43.7
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 4.8e-23 112.8 153 40.5
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 6.2e-23 112.5 175 56.6
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 1.0e-17 95.1 119 54.6
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 1.9e-16 90.9 141 43.3
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 1.2e-10 71.6 93 38.7
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 1.6e-10 71.2 149 30.2
Aa31LG5G800 Aethionema arabicum HOM05D001977 ORTHO05D002246 2.7e-10 70.5 146 30.8
Cfa006376 Carpinus fangiana HOM05D001109 ORTHO05D001051 2.3e-09 67.4 144 27.8
Mapoly0015s0136 Marchantia polymorpha HOM05D001109 ORTHO05D000739 3.0e-09 67.0 139 29.5
CARHR249100 Cardamine hirsuta HOM05D001109 ORTHO05D001051 3.9e-09 66.6 97 36.1
AL6G52180 Arabidopsis lyrata HOM05D001109 ORTHO05D001051 6.7e-09 65.9 97 35.1
Carub.0006s3624 Capsella rubella HOM05D001109 ORTHO05D001051 6.7e-09 65.9 146 28.8
C09p00760 Brassica napus HOM05D001977 ORTHO05D002246 3.3e-08 63.5 144 30.6
BolC9t53010H Brassica oleracea HOM05D001977 ORTHO05D002246 3.3e-08 63.5 144 30.6
BraA09t35742Z Brassica rapa HOM05D001977 ORTHO05D002246 3.3e-08 63.5 144 30.6
Thhalv10028892m.g Eutrema salsugineum HOM05D001109 ORTHO05D001051 4.3e-08 63.2 97 35.1
DCAR_025234 Daucus carota HOM05D001109 ORTHO05D001051 9.6e-08 62.0 99 36.4
Hma1.2p1_1336F.1_g276460 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 9.6e-08 62.0 153 26.1
Sp6g00920 Schrenkiella parvula HOM05D001109 ORTHO05D001051 9.6e-08 62.0 97 34.0
Dinv31709 Davidia involucrata HOM05D001109 ORTHO05D001051 1.3e-07 61.6 93 34.4
Nn7g37339 Nelumbo nucifera HOM05D001109 ORTHO05D001051 1.6e-07 61.2 148 29.1
Actinidia39363 Actinidia chinensis HOM05D001109 ORTHO05D001051 2.1e-07 60.8 143 27.3
CSS0007005 Camellia sinensis var. sinensis HOM05D001109 ORTHO05D001051 2.8e-07 60.5 142 26.8
Prupe.2G181800 Prunus persica HOM05D001109 ORTHO05D001051 2.8e-07 60.5 102 30.4
Cpa.g.sc184.8 Carica papaya HOM05D001109 ORTHO05D001051 3.7e-07 60.1 97 32.0
Solyc03g005720.3 Solanum lycopersicum HOM05D001109 ORTHO05D001051 4.8e-07 59.7 142 25.4
Aqoxy7G00224 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 6.3e-07 59.3 93 36.6
Sopen03g001730 Solanum pennellii HOM05D001109 ORTHO05D001051 6.3e-07 59.3 142 25.4
HPP92_022477 Vanilla planifolia HOM05D001109 ORTHO05D001051 6.3e-07 59.3 77 40.3
Atru.chr2.1058 Acer truncatum HOM05D001109 ORTHO05D001051 8.2e-07 58.9 142 25.4
MSTRG.9214 Avicennia marina HOM05D001109 ORTHO05D001051 1.1e-06 58.5 146 27.4
EL10Ac4g09751 Beta vulgaris HOM05D001109 ORTHO05D001051 1.1e-06 58.5 120 26.7
Gorai.004G254600 Gossypium raimondii HOM05D001109 ORTHO05D001051 1.1e-06 58.5 96 31.2
Haze_17186 Corylus avellana HOM05D002301 ORTHO05D002316 1.4e-06 58.2 140 26.4
PGSC0003DMG400013409 Solanum tuberosum HOM05D001109 ORTHO05D001051 1.4e-06 58.2 142 25.4
Thecc.01G349500 Theobroma cacao HOM05D001109 ORTHO05D001051 1.4e-06 58.2 97 34.0
A04p25620 Brassica napus HOM05D001109 ORTHO05D001051 1.8e-06 57.8 143 29.4
BraA04t18066Z Brassica rapa HOM05D001109 ORTHO05D001051 1.8e-06 57.8 143 29.4
Manes.08G140600 Manihot esculenta HOM05D001109 ORTHO05D001051 1.8e-06 57.8 142 25.4
Sp4g15630 Schrenkiella parvula HOM05D001109 ORTHO05D001051 1.8e-06 57.8 143 28.7
BcaC02g07840 Brassica carinata HOM05D001109 ORTHO05D001051 2.4e-06 57.4 143 29.4
C04p62750 Brassica napus HOM05D001109 ORTHO05D001051 2.4e-06 57.4 143 29.4
BolC4t27759H Brassica oleracea HOM05D001109 ORTHO05D001051 2.4e-06 57.4 143 29.4
Carub.0004s1494 Capsella rubella HOM05D001109 ORTHO05D001051 2.4e-06 57.4 143 28.7
AL4G28970 Arabidopsis lyrata HOM05D001109 ORTHO05D001051 3.1e-06 57.0 143 28.7
Thhalv10016412m.g Eutrema salsugineum HOM05D001109 ORTHO05D001051 3.1e-06 57.0 143 28.7
Gohir.A08G221618 Gossypium hirsutum HOM05D001109 ORTHO05D001051 3.1e-06 57.0 135 25.9
BcaB02g10551 Brassica carinata HOM05D001109 ORTHO05D001051 4.1e-06 56.6 201 27.4
Carub.0003s0357 Capsella rubella HOM05D001109 ORTHO05D001051 4.1e-06 56.6 96 34.4
Migut.F02060 Erythranthe guttata HOM05D001109 ORTHO05D001051 4.1e-06 56.6 163 25.8
Solyc01g095360.2 Solanum lycopersicum HOM05D001109 ORTHO05D001051 4.1e-06 56.6 103 29.1
Sopen01g039130 Solanum pennellii HOM05D001109 ORTHO05D001051 4.1e-06 56.6 103 29.1
Cfa001363 Carpinus fangiana HOM05D002301 ORTHO05D002316 5.3e-06 56.2 140 26.4
Manes.01G250700 Manihot esculenta HOM05D001109 ORTHO05D001051 5.3e-06 56.2 141 28.4
PGSC0003DMG400000080 Solanum tuberosum HOM05D001109 ORTHO05D001051 6.9e-06 55.8 120 27.5
THA.LOC104798699 Tarenaya hassleriana HOM05D002301 ORTHO05D002316 6.9e-06 55.8 157 24.2
MD01G1073700 Malus domestica HOM05D001109 ORTHO05D001051 9.0e-06 55.5 98 28.6
Peaxi162Scf00401g00012 Petunia axillaris HOM05D002301 ORTHO05D002316 9.0e-06 55.5 140 25.0
TAR330G0002 Trochodendron aralioides HOM05D001109 ORTHO05D001051 9.0e-06 55.5 179 25.7


User provided reference genes

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