Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 2.7e-126 455.3 223 100.0
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 3.0e-101 372.1 322 63.7
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 1.8e-74 283.1 328 50.3
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 2.7e-73 279.3 195 71.8
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 3.5e-73 278.9 324 51.9
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 1.7e-72 276.6 320 49.1
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.3e-72 276.2 319 49.8
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.6e-72 274.6 322 49.7
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.1e-71 273.9 322 49.1
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 5.6e-71 271.6 322 47.5
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 1.0e-69 267.3 336 47.6
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 3.0e-69 265.8 342 46.5
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 4.0e-69 265.4 325 49.2
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 8.9e-69 264.2 188 71.3
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 5.7e-68 261.5 323 49.2
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 2.9e-67 259.2 322 50.0
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 1.4e-66 256.9 322 48.4
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 9.2e-66 254.2 189 68.8
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 2.0e-65 253.1 277 51.6
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 4.6e-65 251.9 325 48.0
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 4.6e-65 251.9 322 47.2
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 5.9e-65 251.5 317 48.3
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 7.8e-65 251.1 334 45.2
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 2.3e-64 249.6 317 46.4
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 6.6e-64 248.1 326 46.3
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 6.6e-64 248.1 326 46.6
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.9e-63 246.5 181 68.5
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 9.5e-63 244.2 187 68.4
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 9.5e-63 244.2 314 47.8
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.2e-62 243.8 174 70.7
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 3.6e-62 242.3 332 46.1
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 2.3e-61 239.6 309 45.6
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 3.1e-61 239.2 307 45.6
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 4.0e-61 238.8 275 52.4
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 4.0e-61 238.8 186 62.4
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 4.0e-61 238.8 360 41.4
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.6e-60 236.1 309 46.0
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 3.4e-60 235.7 339 42.5
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 3.4e-60 235.7 308 47.4
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 4.4e-60 235.3 322 45.7
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 7.5e-60 234.6 328 47.0
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 9.8e-60 234.2 309 45.0
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 1.3e-59 233.8 317 45.4
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 2.9e-59 232.6 339 43.1
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 3.7e-59 232.3 188 62.2
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 8.3e-59 231.1 189 63.5
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 4.6e-57 225.3 187 58.8
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 6.6e-56 221.5 149 73.8
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.1e-55 220.7 179 62.6
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 1.2e-54 217.2 156 66.7
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 3.6e-54 215.7 180 63.9
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 3.1e-53 212.6 174 58.0
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 1.5e-52 210.3 174 59.8
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.0e-52 209.9 225 48.0
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 8.3e-51 204.5 182 56.6
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 1.4e-50 203.8 156 62.2
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 2.4e-50 203.0 316 41.1
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 3.2e-50 202.6 181 56.9
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 4.1e-50 202.2 192 56.2
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 5.4e-50 201.8 154 64.9
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 9.2e-50 201.1 176 56.8
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 1.2e-49 200.7 182 55.5
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 6.0e-49 198.4 174 56.9
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 7.8e-49 198.0 181 53.6
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 7.8e-49 198.0 174 55.7
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 1.0e-48 197.6 163 56.4
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 1.3e-48 197.2 176 56.8
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.3e-48 196.4 242 45.5
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 3.9e-48 195.7 176 56.2
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 5.1e-48 195.3 126 72.2
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 8.6e-48 194.5 331 39.9
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 1.1e-47 194.1 158 66.5
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.5e-47 193.7 174 54.0
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.9e-47 193.4 184 52.2
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 1.6e-46 190.3 186 58.1
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 3.6e-46 189.1 185 51.4
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 3.6e-46 189.1 151 58.3
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 6.2e-46 188.3 185 53.5
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 1.1e-45 187.6 160 58.8
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 1.8e-45 186.8 167 58.7
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 2.3e-45 186.4 163 54.0
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 3.1e-45 186.0 185 53.0
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 4.0e-45 185.7 174 53.4
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 4.0e-45 185.7 171 58.5
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 3.4e-44 182.6 168 57.7
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 7.6e-44 181.4 127 70.1
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 7.6e-44 181.4 183 51.4
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 1.3e-43 180.6 169 57.4
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 6.4e-43 178.3 183 49.7
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 8.4e-43 177.9 167 54.5
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 1.1e-42 177.6 168 56.5
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 1.1e-42 177.6 182 51.1
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 1.9e-42 176.8 167 56.3
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 3.2e-42 176.0 167 56.9
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 5.4e-42 175.3 168 56.0
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 5.4e-42 175.3 168 55.4
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 9.2e-42 174.5 167 56.9
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 1.2e-41 174.1 168 55.4
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 2.1e-41 173.3 169 55.0
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.7e-41 172.9 158 58.2
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 2.3e-40 169.9 170 54.7
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 3.0e-40 169.5 170 54.7
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 3.9e-40 169.1 183 50.8
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 8.6e-40 167.9 224 45.1
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 1.9e-39 166.8 182 50.5
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 4.7e-38 162.2 167 53.3
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 4.7e-38 162.2 167 53.3
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 3.1e-37 159.5 167 52.7
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 3.1e-37 159.5 184 47.8
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 4.0e-37 159.1 167 52.1
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 7.6e-36 154.8 167 50.3
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 3.8e-35 152.5 160 48.1
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 6.9e-29 131.7 108 63.0
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 6.4e-27 125.2 124 57.3
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 1.4e-26 124.0 160 45.6
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 1.4e-26 124.0 160 45.6
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.5e-23 114.0 158 43.7
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 2.5e-23 113.2 171 40.9
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 4.8e-22 109.0 153 39.2
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 8.4e-11 71.6 100 46.0
Aa31LG5G800 Aethionema arabicum HOM05D001977 ORTHO05D002246 1.8e-08 63.9 97 37.1
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 1.8e-08 63.9 120 30.0
Cfa006376 Carpinus fangiana HOM05D001109 ORTHO05D001051 2.3e-08 63.5 104 32.7
CARHR249100 Cardamine hirsuta HOM05D001109 ORTHO05D001051 6.7e-08 62.0 97 36.1
Carub.0006s3624 Capsella rubella HOM05D001109 ORTHO05D001051 8.7e-08 61.6 97 35.1
AL6G52180 Arabidopsis lyrata HOM05D001109 ORTHO05D001051 1.1e-07 61.2 97 35.1
Haze_04403 Corylus avellana HOM05D001109 ORTHO05D001051 3.3e-07 59.7 96 33.3
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 4.3e-07 59.3 149 28.2
Mapoly0015s0136 Marchantia polymorpha HOM05D001109 ORTHO05D000739 5.7e-07 58.9 139 28.1
Thhalv10028892m.g Eutrema salsugineum HOM05D001109 ORTHO05D001051 7.4e-07 58.5 97 35.1
Prupe.2G181800 Prunus persica HOM05D001109 ORTHO05D001051 1.3e-06 57.8 102 30.4
C09p00760 Brassica napus HOM05D001977 ORTHO05D002246 1.6e-06 57.4 97 34.0
BolC9t53010H Brassica oleracea HOM05D001977 ORTHO05D002246 1.6e-06 57.4 97 34.0
BraA09t35742Z Brassica rapa HOM05D001977 ORTHO05D002246 1.6e-06 57.4 97 34.0
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 1.6e-06 57.4 31 83.9
Sp6g00920 Schrenkiella parvula HOM05D001109 ORTHO05D001051 1.6e-06 57.4 97 34.0
Aqoxy7G00224 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 4.8e-06 55.8 122 31.1
BcaC07g39527 Brassica carinata HOM05D006307 ORTHO05D008123 6.3e-06 55.5 50 58.0
DCAR_025234 Daucus carota HOM05D001109 ORTHO05D001051 6.3e-06 55.5 99 34.3
arahy.Tifrunner.gnm1.ann1.07VZ9L Arachis hypogaea HOM05D001382 ORTHO05D001266 8.2e-06 55.1 97 36.1
arahy.Tifrunner.gnm1.ann1.MLQ69B Arachis hypogaea HOM05D001382 ORTHO05D001266 8.2e-06 55.1 97 36.1
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 8.2e-06 55.1 31 80.6
RcHm_v2.0_Chr1g0358431 Rosa chinensis HOM05D001109 ORTHO05D001051 8.2e-06 55.1 98 30.6


User provided reference genes

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