Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.5e-164 582.8 290 100.0
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 8.7e-101 370.9 249 75.5
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.3e-99 367.1 251 74.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.6e-99 366.7 259 72.2
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 2.8e-99 365.9 251 74.1
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 4.8e-99 365.2 281 67.6
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 8.2e-99 364.4 275 68.7
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.1e-98 364.0 282 67.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 5.3e-98 361.7 289 65.7
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.2e-97 360.5 283 67.1
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 2.0e-97 359.8 246 74.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 7.7e-97 357.8 290 65.5
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 7.7e-97 357.8 284 64.4
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.0e-96 357.5 286 66.4
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.3e-96 357.1 280 66.1
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.7e-96 356.7 286 66.1
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 8.5e-96 354.4 281 65.8
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 4.2e-95 352.1 254 71.3
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 5.5e-95 351.7 252 71.0
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 5.5e-95 351.7 289 64.4
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.1e-94 349.7 258 69.8
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.1e-94 349.7 273 68.1
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.7e-94 349.4 286 64.7
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 3.6e-94 349.0 283 66.8
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 7.9e-94 347.8 276 66.3
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 7.9e-94 347.8 284 65.1
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 2.3e-93 346.3 254 69.7
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.0e-93 345.9 258 69.0
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 3.0e-93 345.9 278 64.4
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 3.9e-93 345.5 286 63.3
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.9e-93 345.5 284 65.1
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 5.1e-93 345.1 288 64.9
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.1e-93 345.1 258 68.6
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 6.7e-93 344.7 257 68.9
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 8.8e-93 344.4 254 68.9
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.1e-92 344.0 286 62.6
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.1e-92 344.0 250 67.6
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 1.5e-92 343.6 237 71.3
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.6e-92 342.8 290 64.1
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.6e-92 342.8 289 62.3
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 2.6e-92 342.8 284 64.1
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.6e-92 342.8 253 68.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 3.3e-92 342.4 287 64.1
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 4.4e-92 342.0 290 63.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 4.4e-92 342.0 253 68.8
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 5.7e-92 341.7 222 77.0
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 7.4e-92 341.3 284 64.4
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 9.7e-92 340.9 284 65.1
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.7e-91 340.1 284 63.7
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 2.2e-91 339.7 254 68.1
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.8e-91 339.3 286 63.3
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.8e-91 339.3 276 63.4
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.1e-90 337.4 283 62.2
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 1.1e-90 337.4 283 64.3
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.4e-90 337.0 284 63.0
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.8e-90 336.7 254 67.7
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 2.4e-90 336.3 249 68.3
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 2.4e-90 336.3 257 66.1
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.1e-90 335.9 224 73.2
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 4.1e-90 335.5 224 72.8
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 4.1e-90 335.5 286 63.6
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 9.1e-90 334.3 257 65.0
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 9.1e-90 334.3 233 72.1
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.4e-89 332.4 257 64.6
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.4e-89 332.4 284 63.4
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 7.7e-89 331.3 253 67.6
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 2.2e-88 329.7 282 64.5
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.9e-88 329.3 257 65.8
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.1e-87 327.4 221 72.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.4e-87 327.0 220 73.6
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 4.2e-87 325.5 220 74.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 7.2e-87 324.7 284 60.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.2e-87 324.7 249 68.7
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 7.2e-87 324.7 228 70.2
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 4.7e-86 322.0 228 68.9
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.4e-85 320.5 226 69.5
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.8e-85 320.1 239 66.1
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.2e-85 318.5 249 67.5
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 8.8e-85 317.8 281 62.6
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 7.4e-84 314.7 225 67.1
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 9.7e-84 314.3 254 64.2
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 2.2e-83 313.2 213 72.8
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.2e-83 313.2 238 68.5
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.4e-82 310.5 253 64.0
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.8e-82 310.1 224 68.8
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 5.3e-82 308.5 229 69.4
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 5.3e-82 308.5 255 62.4
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.9e-81 305.1 291 58.1
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.3e-80 303.9 278 56.8
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.1e-79 300.8 249 62.7
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.1e-79 300.8 300 56.7
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 4.2e-79 298.9 336 52.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 9.4e-79 297.7 267 58.8
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.7e-78 296.2 257 62.6
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.7e-78 295.4 249 61.4
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 4.0e-77 292.4 226 67.7
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.6e-76 289.7 209 67.0
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.6e-76 289.7 209 67.0
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 4.4e-76 288.9 189 73.5
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 4.4e-76 288.9 261 59.4
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-75 287.3 209 66.5
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.3e-75 287.3 209 66.5
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.1e-74 282.7 218 68.3
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 4.5e-73 278.9 190 74.7
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 4.5e-73 278.9 169 79.9
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.6e-70 270.4 186 74.7
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 2.7e-70 269.6 213 64.8
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 2.3e-69 266.5 284 52.1
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.2e-65 254.2 169 76.3
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 3.0e-61 239.6 245 49.4
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 8.8e-61 238.0 249 56.6
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.2e-60 237.7 240 49.2
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.4e-58 230.7 232 49.1
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 2.3e-56 223.4 160 68.8
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.2e-49 201.1 215 45.1
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 2.0e-49 200.3 199 49.7
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.7e-48 197.2 146 68.5
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 9.5e-47 191.4 139 69.8
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 3.6e-46 189.5 217 52.1
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.2e-41 174.5 148 60.8
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 6.0e-41 172.2 140 64.3
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 2.1e-33 147.1 108 68.5
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.9e-31 140.6 130 59.2
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 9.9e-28 128.3 191 35.1
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.8e-22 110.2 80 66.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.4e-21 107.1 80 63.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 3.1e-21 106.7 190 34.7
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.8e-19 99.8 135 47.4
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 9.3e-18 95.1 84 59.5
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.2e-17 94.7 77 59.7
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 3.5e-17 93.2 92 57.6
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.0e-17 92.4 85 58.8
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.0e-16 91.7 70 62.9
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 1.3e-11 74.7 192 28.6
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 7.9e-09 65.5 43 69.8
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 3.0e-08 63.5 73 49.3
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 5.1e-08 62.8 118 36.4
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 6.7e-08 62.4 40 75.0
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.9e-07 60.8 52 53.8
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 5.6e-07 59.3 35 80.0
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 6.2e-06 55.8 50 56.0


User provided reference genes

Program Settings