Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 3.5e-183 644.8 319 100.0
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.0e-158 563.5 317 86.1
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.1e-156 555.8 319 85.0
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.0e-155 553.5 317 85.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.8e-155 552.7 317 84.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.0e-155 552.0 318 84.9
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 4.0e-155 551.6 319 84.3
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 4.0e-155 551.6 319 84.3
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.2e-154 550.1 317 84.2
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.5e-154 549.7 319 84.3
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.0e-154 549.3 319 83.7
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 2.6e-154 548.9 320 83.8
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.4e-154 548.1 319 84.0
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 5.7e-154 547.7 319 83.1
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.3e-153 546.6 319 84.3
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.3e-153 546.6 319 82.8
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 3.7e-153 545.0 319 82.4
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.4e-152 543.1 320 84.1
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.8e-152 542.7 319 83.4
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 2.4e-152 542.3 317 82.6
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 3.2e-152 542.0 319 82.4
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 4.1e-152 541.6 317 83.3
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 4.1e-152 541.6 319 83.4
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 4.1e-152 541.6 319 82.1
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 9.2e-152 540.4 313 84.3
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.6e-151 539.7 319 82.4
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.6e-151 539.7 319 82.1
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 2.0e-151 539.3 319 81.2
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.0e-151 539.3 319 82.4
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 3.5e-151 538.5 319 81.8
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 3.5e-151 538.5 319 82.1
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 4.5e-151 538.1 319 80.3
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.9e-151 537.7 342 78.9
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 7.8e-151 537.3 319 79.9
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 1.0e-150 537.0 318 82.7
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.7e-150 536.2 319 82.1
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.7e-150 536.2 319 82.1
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.3e-150 535.8 319 81.5
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.9e-150 535.4 320 82.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 2.9e-150 535.4 319 81.2
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.0e-150 534.6 319 82.4
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 8.6e-150 533.9 318 82.4
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.1e-149 533.5 319 79.6
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.5e-149 533.1 319 79.6
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.5e-149 533.1 320 80.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.5e-149 532.3 319 79.9
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.5e-149 532.3 318 80.2
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.5e-149 532.3 320 81.9
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 3.3e-149 531.9 319 79.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.6e-149 531.2 320 81.6
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 5.6e-149 531.2 319 81.5
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 5.6e-149 531.2 319 82.4
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 7.3e-149 530.8 319 80.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.3e-149 530.8 334 78.7
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.6e-148 529.6 318 80.2
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 2.1e-148 529.3 318 79.9
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.1e-148 529.3 320 81.2
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 2.8e-148 528.9 318 82.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.6e-148 528.5 317 81.4
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 8.0e-148 527.3 318 82.1
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 1.4e-147 526.6 319 79.6
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.4e-147 526.6 320 81.9
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.4e-147 526.6 319 80.6
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.8e-147 526.2 319 78.4
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.8e-147 526.2 319 80.6
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 3.1e-147 525.4 319 79.3
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 4.0e-147 525.0 318 79.6
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 5.2e-147 524.6 319 79.6
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 6.8e-147 524.2 319 79.9
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 8.9e-147 523.9 317 79.5
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.2e-146 523.5 319 80.6
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-146 523.5 319 79.0
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.5e-146 523.1 319 78.4
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.0e-146 522.7 319 79.9
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.6e-146 522.3 319 80.3
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.6e-146 522.3 319 79.0
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 5.8e-146 521.2 319 78.7
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 9.8e-146 520.4 319 78.7
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.3e-145 520.0 319 80.6
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.7e-145 519.6 320 80.3
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.7e-145 519.6 320 80.3
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.7e-145 519.6 319 80.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 4.9e-145 518.1 319 77.4
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 6.4e-145 517.7 316 79.4
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.4e-144 515.8 320 79.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 2.4e-144 515.8 318 78.6
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-144 515.4 318 79.6
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 5.4e-144 514.6 318 79.9
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 9.2e-144 513.8 321 79.8
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.2e-144 513.8 321 79.8
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.2e-143 513.5 321 79.4
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.2e-143 513.5 321 79.8
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-143 512.3 321 79.4
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-143 512.3 321 79.4
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.7e-143 512.3 321 79.4
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.0e-143 511.1 341 75.4
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.0e-142 510.4 326 77.3
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.3e-142 510.0 313 79.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 2.3e-142 509.2 386 69.2
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 3.0e-142 508.8 319 78.7
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 6.6e-142 507.7 319 79.0
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 1.9e-141 506.1 321 78.8
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.6e-140 503.1 313 80.2
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 8.0e-140 500.7 317 76.7
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 1.4e-139 500.0 310 79.7
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 5.2e-139 498.0 317 76.3
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 2.0e-138 496.1 325 75.4
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 5.8e-138 494.6 321 75.4
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 6.4e-137 491.1 322 76.1
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 5.4e-136 488.0 300 77.3
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 7.1e-136 487.6 314 76.8
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-134 483.0 319 75.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 9.5e-133 477.2 324 72.2
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.1e-132 476.1 315 74.6
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.8e-132 475.7 319 74.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 4.7e-132 474.9 289 80.3
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.8e-131 473.0 286 81.5
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.2e-131 471.5 317 75.4
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 6.8e-131 471.1 292 80.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 6.8e-131 471.1 287 79.1
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.2e-130 470.3 314 74.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.4e-130 468.4 330 70.6
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.9e-128 463.0 319 72.7
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.0e-126 457.2 317 72.2
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 6.6e-126 454.5 320 71.2
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.9e-125 453.0 317 71.6
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 3.6e-124 448.7 467 54.2
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.6e-119 431.8 320 68.1
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 5.1e-118 428.3 316 64.9
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 9.6e-117 424.1 288 71.2
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.8e-114 414.8 244 81.6
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-113 412.1 266 75.9
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 4.9e-113 411.8 318 66.0
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.6e-92 343.6 217 76.0
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 2.9e-81 306.2 252 58.7
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.5e-80 303.1 182 82.4
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 5.7e-77 292.0 177 81.9
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 2.9e-73 279.6 317 47.9
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 3.8e-73 279.3 196 70.9
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 8.5e-73 278.1 314 48.7
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 7.4e-69 265.0 273 53.5
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 2.4e-67 260.0 164 76.2
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-63 246.9 155 76.1
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-63 246.9 155 76.1
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 9.7e-61 238.0 307 44.3
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.7e-60 236.1 172 63.4
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 7.7e-58 228.4 292 46.2
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 2.2e-57 226.9 310 40.3
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 2.7e-55 219.9 188 62.8
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 7.5e-53 211.8 112 86.6
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.8e-51 207.2 186 59.1
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.0e-46 191.4 305 42.3
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.2e-45 188.0 131 71.0
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-45 187.6 153 66.7
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 9.8e-45 184.9 113 76.1
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 9.8e-45 184.9 113 76.1
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.3e-44 182.2 146 66.4
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 8.3e-44 181.8 113 75.2
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 7.7e-42 175.3 103 79.6
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.9e-41 173.3 137 64.2
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-40 171.0 183 55.2
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 7.3e-40 168.7 172 52.3
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 2.4e-35 153.7 281 34.9
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.2e-31 141.4 120 63.3
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 2.3e-30 137.1 108 63.0
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 3.2e-27 126.7 118 57.6
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.5e-24 117.9 68 77.9
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.2e-23 114.8 80 72.5
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.2e-23 114.8 80 72.5
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.2e-22 109.4 60 83.3
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 4.4e-21 106.3 72 65.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 6.0e-18 95.9 53 86.8
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.3e-17 94.7 94 59.6
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.3e-17 94.7 117 41.9
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 3.6e-15 86.7 53 77.4
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.1e-14 85.1 52 78.8
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.5e-13 81.3 62 64.5
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 2.6e-13 80.5 106 49.1
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 3.0e-09 67.0 44 70.5
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 6.8e-06 55.8 67 44.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 6.8e-06 55.8 67 44.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 6.8e-06 55.8 67 44.8


User provided reference genes

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