Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 4.7e-302 1040.4 533 100.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 7.0e-229 797.3 534 74.7
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.7e-223 777.7 516 74.8
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 9.1e-221 770.4 516 74.2
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.0e-220 769.2 533 73.4
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.7e-219 766.1 520 73.3
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 6.5e-219 764.2 525 73.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.2e-218 761.5 521 74.1
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.7e-217 758.8 512 74.0
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 4.7e-217 758.1 523 74.4
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.8e-216 756.1 530 71.9
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.2e-215 753.4 535 71.0
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.5e-215 753.1 533 72.0
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 3.3e-215 751.9 512 73.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 4.4e-215 751.5 502 75.3
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 7.5e-215 750.7 535 69.9
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.8e-214 748.8 542 70.7
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.8e-214 748.0 530 71.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.8e-213 746.1 530 71.5
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 7.0e-213 744.2 523 72.1
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 9.1e-213 743.8 520 71.2
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.7e-211 739.6 520 71.2
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 5.0e-211 738.0 512 71.5
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 6.5e-211 737.6 530 71.5
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 6.5e-211 737.6 582 65.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-210 736.9 517 70.2
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 2.5e-210 735.7 512 70.9
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 3.2e-210 735.3 517 70.4
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 4.2e-210 734.9 533 70.4
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 5.5e-210 734.6 517 70.2
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 7.2e-210 734.2 509 71.7
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 7.2e-210 734.2 520 71.3
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.1e-209 732.6 517 70.2
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.7e-209 732.3 523 71.1
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 4.7e-209 731.5 524 70.8
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 8.0e-209 730.7 530 70.8
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.3e-208 729.2 515 70.3
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 4.0e-208 728.4 520 71.0
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.1e-205 720.3 533 67.7
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 4.1e-205 718.4 509 69.9
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 4.5e-204 714.9 517 70.2
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 7.7e-204 714.1 536 68.5
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 7.7e-204 714.1 525 70.9
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.0e-203 713.8 512 70.1
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.9e-203 712.2 515 70.1
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 5.0e-203 711.4 536 68.3
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.9e-202 709.5 512 69.9
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.3e-202 708.8 515 68.5
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 8.0e-201 704.1 510 71.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.3e-200 702.6 516 67.6
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.0e-200 702.2 495 72.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.6e-199 699.1 508 69.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 4.4e-199 698.4 514 67.3
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.7e-196 689.1 478 73.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.5e-194 682.6 533 65.7
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.3e-194 681.8 499 70.7
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.8e-193 679.1 533 66.0
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 4.4e-191 671.8 472 70.6
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.1e-189 667.2 616 57.8
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.2e-189 665.6 509 65.8
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.6e-188 663.3 451 73.6
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.6e-188 663.3 534 64.0
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.5e-188 662.1 507 69.0
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.5e-186 656.0 521 64.1
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 7.3e-186 654.4 527 65.5
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.6e-185 652.1 462 73.2
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.6e-185 652.1 523 66.0
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 3.4e-183 645.6 475 68.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 5.8e-183 644.8 508 65.0
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 5.4e-181 638.3 544 60.8
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.8e-180 634.4 427 74.7
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.1e-178 630.6 547 60.9
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 5.6e-178 628.2 443 70.9
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.8e-176 623.2 514 62.5
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 5.2e-176 621.7 547 60.1
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.4e-173 611.7 507 63.9
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.6e-172 610.1 480 65.6
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.7e-172 609.4 562 58.4
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 6.0e-172 608.2 426 73.7
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.9e-171 605.5 441 71.0
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.8e-169 599.4 413 73.1
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.5e-167 593.6 471 67.7
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.3e-162 575.5 547 57.2
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.6e-161 573.5 418 69.1
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.1e-160 570.9 555 57.7
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-159 567.0 387 74.9
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 7.6e-159 564.7 426 65.5
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 3.2e-157 559.3 510 58.2
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.1e-156 556.6 424 69.3
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.0e-155 554.3 573 53.9
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.6e-155 551.6 585 52.8
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 7.6e-151 538.1 513 56.9
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 9.9e-151 537.7 446 62.8
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 2.4e-144 516.5 448 59.8
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 9.0e-144 514.6 489 55.0
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 9.3e-141 504.6 398 67.3
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 5.1e-139 498.8 465 56.8
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.5e-138 496.5 426 63.8
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 5.7e-138 495.4 474 57.2
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-137 494.2 376 67.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 3.1e-136 489.6 476 56.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.9e-136 488.4 458 56.1
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.3e-126 457.6 305 74.1
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 3.1e-120 436.4 509 47.0
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 9.4e-117 424.9 340 64.7
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.4e-115 421.0 392 59.4
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.3e-115 420.2 299 71.9
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 1.3e-113 414.5 478 47.5
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 8.8e-107 391.7 503 43.7
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.0e-99 366.7 252 71.4
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.7e-97 360.9 326 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.9e-93 347.4 443 45.4
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.2e-81 307.4 232 64.7
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.1e-77 295.0 212 71.2
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.2e-76 289.3 464 42.0
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 9.8e-74 282.0 382 46.3
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 6.6e-70 269.2 195 73.8
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.6e-68 264.6 191 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 4.0e-67 260.0 430 40.5
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.7e-65 254.6 238 61.3
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 4.6e-63 246.5 185 67.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.8e-60 237.3 662 30.4
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 6.8e-51 206.1 200 54.0
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 2.6e-50 204.1 162 62.3
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.1e-48 198.7 183 56.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.5e-45 188.3 508 31.9
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 7.1e-40 169.5 162 58.6
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 6.0e-39 166.4 150 61.3
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 3.6e-36 157.1 164 51.8
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.0e-34 151.4 97 80.4
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.2e-32 143.7 108 69.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.2e-32 143.7 122 57.4
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.6e-28 131.7 86 69.8
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 2.0e-26 124.8 127 57.5
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.6e-26 124.4 97 59.8
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.6e-26 124.4 97 60.8
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.5e-26 123.6 153 47.1
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.5e-26 123.6 153 47.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.9e-24 118.2 560 26.8
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 7.4e-21 106.3 88 62.5
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.6e-20 105.1 64 79.7
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 6.3e-20 103.2 78 59.0
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.2e-18 99.0 67 76.1
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 5.9e-18 96.7 56 85.7
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.5e-16 90.1 78 55.1
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.6e-15 88.6 62 74.2
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.6e-15 88.6 62 74.2
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.6e-15 87.0 236 34.7
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.9e-13 81.6 54 64.8
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.4e-13 79.7 48 79.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.0e-11 72.8 50 74.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 2.0e-10 71.6 127 44.9
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.9e-08 65.1 190 31.1


User provided reference genes

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