Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 3.0e-260 901.4 462 100.0
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.8e-172 609.8 417 76.5
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 4.0e-172 608.6 413 78.0
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 3.7e-170 602.1 431 73.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.2e-168 597.0 411 77.1
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.7e-167 593.2 415 74.5
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 8.6e-167 590.9 421 74.3
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.1e-166 590.5 412 75.5
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 6.1e-165 584.7 467 68.1
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 6.1e-165 584.7 416 74.3
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 9.8e-163 577.4 420 73.6
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.3e-162 577.0 414 72.9
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.4e-161 572.8 412 73.8
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.0e-160 569.7 472 66.5
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.5e-160 568.9 460 67.4
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 7.8e-160 567.8 465 67.1
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 3.0e-159 565.8 410 73.4
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 6.6e-159 564.7 420 73.3
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 8.6e-159 564.3 408 73.3
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.9e-158 563.1 425 71.5
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 5.6e-158 561.6 464 66.8
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 9.5e-158 560.8 481 66.5
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 9.5e-158 560.8 481 66.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.2e-157 560.5 410 73.7
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.6e-157 560.1 422 71.1
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 8.0e-157 557.8 422 71.8
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.0e-156 557.4 464 66.6
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.8e-156 556.6 469 65.9
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 2.3e-156 556.2 408 71.3
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.0e-156 555.4 413 71.2
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 8.9e-156 554.3 457 66.7
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.2e-155 553.9 464 65.9
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.5e-155 553.5 413 71.2
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.5e-155 553.5 412 71.8
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.0e-155 553.1 420 71.0
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 2.0e-155 553.1 419 72.1
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.6e-155 552.7 428 69.6
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 3.4e-155 552.4 409 71.9
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 5.8e-155 551.6 413 71.4
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 5.8e-155 551.6 411 72.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.3e-154 550.4 460 66.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.7e-154 550.1 457 67.0
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 6.4e-154 548.1 423 70.7
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.1e-153 547.4 422 70.4
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.4e-153 547.0 407 73.0
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.4e-153 547.0 407 73.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.4e-153 546.2 481 64.2
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.2e-153 545.8 439 68.1
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.2e-153 545.8 407 72.0
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 5.4e-153 545.0 413 71.4
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 9.2e-153 544.3 453 66.2
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.2e-152 543.9 417 70.0
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 2.0e-152 543.1 459 65.1
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.7e-152 542.7 407 72.7
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 4.6e-152 542.0 438 66.7
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.0e-152 541.6 415 69.6
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.3e-151 539.7 469 63.5
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.3e-151 539.7 531 59.5
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 2.3e-151 539.7 433 69.1
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 3.0e-151 539.3 409 71.1
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-150 537.3 402 71.1
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 3.6e-149 532.3 429 68.1
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.7e-149 531.9 401 70.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.7e-149 531.9 401 70.6
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 6.2e-149 531.6 407 71.0
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 8.1e-149 531.2 495 60.2
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.3e-148 529.6 401 70.3
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 5.2e-148 528.5 466 65.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 2.6e-147 526.2 408 70.1
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 2.6e-147 526.2 406 70.2
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 2.2e-146 523.1 411 67.9
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.9e-146 522.7 408 68.6
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.1e-145 520.8 419 68.0
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.4e-145 520.4 491 60.7
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 4.1e-145 518.8 413 67.3
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.2e-144 517.3 418 65.6
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.7e-144 516.2 419 64.9
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.9e-142 510.0 414 66.2
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 5.6e-142 508.4 418 66.0
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.1e-141 506.5 418 64.8
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.1e-141 506.5 416 66.3
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.1e-141 506.5 416 66.3
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.8e-141 506.1 413 66.1
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 3.6e-141 505.8 414 65.7
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.7e-141 505.4 461 63.3
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 6.2e-141 505.0 459 63.2
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 6.2e-141 505.0 407 66.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 8.1e-141 504.6 406 65.5
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.8e-140 503.4 455 63.7
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 7.6e-139 498.0 414 65.2
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.2e-138 496.5 413 64.9
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.0e-135 487.6 395 67.6
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 3.9e-135 485.7 424 63.0
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.2e-133 480.7 435 62.3
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.2e-133 480.7 463 60.5
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 6.2e-133 478.4 494 55.1
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.1e-132 477.6 428 62.1
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.1e-132 477.6 388 66.0
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.2e-130 469.9 404 62.1
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.9e-130 469.5 380 66.6
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.4e-129 466.5 416 61.1
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.2e-128 464.2 363 68.3
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.6e-128 463.8 420 61.0
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.7e-128 463.0 472 58.3
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 5.6e-126 455.3 400 59.8
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.1e-125 453.4 400 60.5
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.6e-123 446.4 400 59.8
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 6.4e-122 441.8 486 53.3
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.2e-121 439.5 409 59.9
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 7.1e-121 438.3 460 56.5
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.8e-119 433.7 385 62.9
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 4.3e-118 429.1 376 63.0
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 7.4e-118 428.3 409 59.7
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 4.8e-117 425.6 382 63.6
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.8e-117 425.6 407 60.4
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-113 414.5 412 56.1
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.4e-113 413.3 300 73.7
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.6e-112 410.6 417 54.7
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-108 397.9 363 59.2
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.4e-108 396.7 396 58.6
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 6.9e-108 395.2 356 61.5
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 7.1e-105 385.2 373 56.6
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.2e-104 384.4 371 56.3
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.3e-103 380.9 377 58.4
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.2e-98 363.6 375 56.3
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 4.1e-92 342.8 603 39.8
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 8.5e-90 335.1 344 55.5
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.9e-87 326.2 336 57.7
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.1e-87 325.9 402 49.8
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.0e-82 311.6 285 61.1
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 8.5e-82 308.5 370 50.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.8e-79 300.8 324 50.9
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-73 281.6 300 55.0
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.2e-73 278.9 290 54.1
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 1.2e-72 278.1 269 55.4
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 9.8e-62 241.9 287 51.2
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 5.5e-57 226.1 121 91.7
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 9.8e-54 215.3 220 58.6
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.8e-52 211.1 215 59.1
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 8.9e-47 192.2 191 54.5
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.5e-46 191.4 239 49.8
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.4e-44 184.9 347 34.0
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.0e-42 177.2 144 67.4
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 9.2e-36 155.6 128 68.8
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 3.0e-34 150.6 88 88.6
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 3.6e-32 143.7 91 84.6
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 2.2e-29 134.4 99 70.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 6.6e-26 122.9 171 46.2
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.8e-23 114.8 67 80.6
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 4.0e-23 113.6 77 77.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 8.9e-23 112.5 72 73.6
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.0e-22 111.3 163 44.2
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.8e-22 109.8 66 84.8
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.2e-20 102.4 58 87.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 7.8e-19 99.4 97 55.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 3.9e-18 97.1 198 37.4
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.9e-18 97.1 62 71.0
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.1e-15 89.0 51 80.4
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.6e-14 84.3 59 69.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.4e-14 83.6 51 78.4
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 7.6e-14 82.8 46 84.8
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.3e-13 82.0 145 39.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-13 81.3 51 76.5
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.9e-13 80.9 55 72.7
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 4.2e-12 77.0 56 69.6
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.4e-12 76.6 52 71.2
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.2e-11 75.5 51 72.5
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 3.3e-09 67.4 75 54.7
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.3e-09 66.2 38 78.9
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 3.6e-08 63.9 41 78.0
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-08 63.9 36 88.9
Nn7g36373 Nelumbo nucifera HOM05D003179 ORTHO05D003563 4.5e-06 57.0 342 22.8


User provided reference genes

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