Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1610.5 846 100.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1335.5 846 81.7
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1324.3 847 81.8
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1323.9 845 80.6
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1317.4 845 80.0
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1315.8 847 80.2
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1312.7 846 80.0
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1312.7 846 80.6
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1312.0 845 80.0
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1310.4 849 80.8
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1309.7 846 79.8
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1308.1 846 79.9
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1307.7 845 80.6
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1306.2 847 80.2
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1305.4 846 80.3
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1302.7 845 80.4
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1302.0 846 79.6
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1300.0 848 78.8
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1296.6 847 78.7
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1296.2 864 78.8
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1295.0 846 79.3
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1292.7 864 78.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1292.3 846 79.3
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1291.2 846 78.8
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1287.7 848 78.3
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1286.9 846 78.6
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1286.9 846 79.0
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1286.2 846 78.5
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 847 79.2
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1282.3 845 78.5
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1282.3 846 78.4
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1281.2 847 78.6
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1279.2 847 79.0
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1275.4 846 78.1
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1273.5 845 79.1
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1271.5 847 78.0
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1269.2 848 77.6
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1268.4 845 78.6
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1265.4 848 77.4
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1263.1 845 78.3
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1262.7 848 77.2
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1259.2 848 77.0
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1256.5 846 77.1
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1252.3 847 76.9
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1249.2 848 75.7
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 847 77.1
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1247.3 847 76.9
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1246.5 845 77.6
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1246.1 868 75.2
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1245.3 845 77.5
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1240.7 847 76.6
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1238.4 847 77.3
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1237.6 845 76.7
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1237.6 845 76.9
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1236.5 846 76.7
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1233.8 846 75.7
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1232.6 848 75.4
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1232.6 846 76.6
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1231.9 846 76.7
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 848 75.4
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1231.1 847 76.2
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1230.3 848 75.0
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1228.0 848 75.0
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1226.8 848 74.9
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1226.8 848 74.9
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1225.7 845 76.7
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1225.3 938 69.9
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1224.5 840 76.4
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 846 74.2
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 848 75.1
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 846 75.9
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1218.4 845 75.3
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 848 74.6
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1213.0 1001 67.1
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1208.7 845 76.0
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1207.6 848 73.8
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1207.6 849 74.2
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1207.2 848 73.9
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1206.8 859 74.9
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1205.3 849 74.3
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1204.1 849 74.0
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1203.0 849 73.9
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1202.6 849 73.9
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1200.7 859 74.7
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1200.7 846 74.3
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1196.8 848 73.2
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1156.0 868 71.7
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1155.2 848 71.6
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1154.8 849 69.8
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1154.8 814 73.7
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1148.3 845 70.7
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1144.0 863 70.3
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1142.5 751 78.0
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1135.2 845 71.1
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1115.1 847 71.4
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1110.5 732 78.6
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 4.1e-300 1034.6 844 68.5
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 1.0e-290 1003.4 690 75.8
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 3.1e-279 965.3 730 67.8
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 1.8e-247 859.8 861 53.0
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 2.6e-246 855.9 867 55.0
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 3.4e-238 828.9 528 80.1
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.8e-237 825.5 551 77.3
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 1.9e-228 796.6 848 52.6
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 5.5e-220 768.5 554 71.5
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.0e-218 764.2 616 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.5e-217 760.4 759 55.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.5e-214 748.8 623 64.4
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.1e-204 717.6 518 73.7
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 3.1e-191 672.9 898 44.7
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 4.4e-185 652.5 429 78.6
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.3e-184 651.0 570 61.4
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 6.8e-178 628.6 449 74.8
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.1e-167 592.8 454 70.5
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 1.2e-161 574.7 405 73.1
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.1e-155 553.9 353 79.9
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.6e-139 501.1 397 66.8
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.0e-125 453.8 389 63.5
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 3.4e-121 440.3 341 67.4
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 2.7e-118 430.6 293 78.2
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.8e-114 417.9 430 58.4
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.6e-110 403.7 257 82.1
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 5.5e-103 379.8 234 80.3
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 4.6e-102 376.7 234 79.5
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 9.4e-95 352.4 869 31.1
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 2.7e-78 297.7 871 28.7
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.0e-78 296.2 212 70.3
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.7e-65 254.6 269 55.0
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.0e-61 242.7 200 63.0
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 2.0e-60 238.4 176 71.6
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.8e-60 236.1 231 59.3
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.8e-58 231.9 290 48.6
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 6.6e-56 223.4 209 65.1
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 2.1e-46 191.8 123 76.4
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.1e-45 189.5 129 72.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 1.3e-43 182.6 127 75.6
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 4.9e-43 180.6 105 90.5
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 4.3e-39 167.5 102 78.4
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 2.8e-38 164.9 102 77.5
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 7.6e-36 156.8 97 78.4
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 9.9e-36 156.4 97 79.4
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.7e-35 155.6 97 81.4
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.9e-34 152.1 95 81.1
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.0e-32 146.4 234 41.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 7.3e-31 140.2 139 54.7
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.6e-31 139.8 95 73.7
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 6.2e-30 137.1 95 76.8
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 5.8e-28 130.6 222 38.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.2e-25 122.9 141 50.4
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 6.0e-25 120.6 248 37.1
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 1.3e-24 119.4 216 39.8
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 1.1e-23 116.3 87 77.0
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-21 109.4 83 71.1
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 5.8e-20 104.0 92 62.0
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.3e-16 92.8 129 49.6
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.9e-16 91.3 72 70.8
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.1e-16 90.9 111 41.4
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.1e-13 83.2 62 71.0
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 6.9e-13 80.5 155 35.5
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 3.2e-10 71.6 172 32.6
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 1.8e-08 65.9 61 55.7
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 4.8e-06 57.8 75 50.7


User provided reference genes

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