Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 1.2e-134 483.0 219 100.0
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 5.8e-97 357.8 216 72.2
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.3e-96 356.7 217 71.4
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 3.7e-96 355.1 220 70.9
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.9e-95 352.8 214 70.1
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.7e-94 349.0 218 70.2
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 2.7e-94 349.0 231 68.0
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 3.5e-94 348.6 216 71.3
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 3.9e-93 345.1 215 68.8
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 3.9e-93 345.1 217 68.2
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 5.1e-93 344.7 217 70.5
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 3.3e-92 342.0 215 69.8
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 3.3e-92 342.0 219 70.3
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 5.6e-92 341.3 218 69.3
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 1.2e-91 340.1 217 70.5
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 1.2e-91 340.1 214 66.8
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 1.6e-91 339.7 217 67.7
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 2.8e-91 339.0 218 71.1
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 4.7e-91 338.2 214 67.8
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 4.7e-91 338.2 217 69.1
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 6.2e-91 337.8 218 67.0
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 6.2e-91 337.8 221 69.2
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 6.2e-91 337.8 223 67.3
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 8.1e-91 337.4 216 68.5
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 8.1e-91 337.4 216 68.5
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 1.4e-90 336.7 221 67.9
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 2.4e-90 335.9 220 69.5
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 4.0e-90 335.1 220 67.3
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 4.0e-90 335.1 218 69.3
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 5.2e-90 334.7 221 67.4
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 8.9e-90 334.0 220 67.3
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 1.2e-89 333.6 214 66.8
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 1.5e-89 333.2 221 69.2
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 2.0e-89 332.8 220 68.2
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 4.4e-89 331.6 217 66.8
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 4.4e-89 331.6 215 66.5
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 4.4e-89 331.6 219 67.1
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 5.8e-89 331.3 217 68.2
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 1.7e-88 329.7 223 66.4
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 1.7e-88 329.7 219 66.7
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 2.2e-88 329.3 220 67.7
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 2.9e-88 328.9 218 67.0
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 6.4e-88 327.8 218 66.5
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 1.1e-87 327.0 215 67.0
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 1.9e-87 326.2 222 66.2
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 4.2e-87 325.1 218 64.7
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 4.2e-87 325.1 216 66.7
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 7.1e-87 324.3 223 64.1
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 7.1e-87 324.3 220 67.3
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 7.1e-87 324.3 217 65.4
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 7.1e-87 324.3 216 66.7
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 9.3e-87 323.9 219 67.1
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 9.3e-87 323.9 219 66.2
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 9.3e-87 323.9 217 65.4
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.6e-86 323.2 222 66.7
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 2.7e-86 322.4 215 66.0
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 3.5e-86 322.0 220 66.4
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 4.6e-86 321.6 214 65.4
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 6.0e-86 321.2 216 64.4
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 7.8e-86 320.9 215 65.6
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 1.0e-85 320.5 216 64.4
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 6.6e-85 317.8 219 67.1
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 1.5e-84 316.6 224 63.8
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 2.5e-84 315.8 226 64.6
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 5.6e-84 314.7 220 64.5
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 7.3e-84 314.3 221 64.3
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 9.6e-84 313.9 218 63.8
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 1.6e-83 313.2 215 63.7
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 2.1e-83 312.8 214 64.0
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 2.8e-83 312.4 227 62.1
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 4.8e-83 311.6 220 64.5
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 6.2e-83 311.2 258 55.4
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 4.0e-82 308.5 287 50.2
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 7.6e-81 304.3 216 61.6
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 8.4e-80 300.8 191 68.1
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 3.2e-79 298.9 229 62.0
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.7e-78 295.8 237 59.5
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 7.9e-78 294.3 189 66.7
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 3.0e-77 292.4 225 58.2
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.9e-76 289.7 187 67.9
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 3.3e-76 288.9 261 52.9
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 5.6e-76 288.1 190 66.3
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.6e-76 288.1 187 67.4
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 5.6e-76 288.1 218 62.4
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 4.8e-75 285.0 182 65.9
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 4.8e-75 285.0 193 67.4
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 6.2e-75 284.6 192 67.2
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 1.4e-74 283.5 182 69.2
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 4.0e-74 282.0 221 57.0
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 5.8e-73 278.1 187 66.8
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 2.2e-72 276.2 200 62.0
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 1.9e-71 273.1 193 63.2
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 2.4e-71 272.7 189 63.0
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 1.8e-69 266.5 182 66.5
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 5.1e-69 265.0 182 64.8
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 6.7e-69 264.6 217 58.5
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 6.7e-69 264.6 217 58.5
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 1.1e-68 263.8 190 60.5
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 1.9e-68 263.1 185 64.9
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 1.9e-68 263.1 183 63.4
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.5e-68 262.7 216 55.6
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 4.3e-68 261.9 188 59.6
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 7.4e-68 261.2 187 62.6
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 7.4e-68 261.2 187 62.6
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 9.6e-68 260.8 181 61.9
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 3.7e-67 258.8 214 55.6
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 9.3e-63 244.2 218 56.4
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 5.1e-61 238.4 195 57.4
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 5.1e-61 238.4 197 57.4
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 6.9e-58 228.0 193 53.4
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 1.3e-53 213.8 124 74.2
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 3.9e-53 212.2 150 63.3
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 3.3e-52 209.1 215 47.4
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 3.7e-51 205.7 127 70.1
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.9e-39 166.8 85 80.0
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 4.5e-33 145.6 71 78.9
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 4.4e-20 102.4 190 33.7
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 6.6e-08 62.0 62 41.9
GSVIVG01018488001 Vitis vinifera HOM05D006795 ORTHO05D008573 6.1e-06 55.5 30 66.7


User provided reference genes

Program Settings