Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 0.0e+00 1112.4 537 100.0
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 4.3e-263 911.0 538 80.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 2.2e-262 908.7 538 80.5
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 1.3e-259 899.4 537 79.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.7e-257 891.0 541 78.2
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 7.4e-255 883.6 542 77.9
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 2.8e-254 881.7 544 78.3
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.1e-253 879.8 540 78.0
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 7.0e-253 877.1 538 78.3
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 3.5e-252 874.8 545 77.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 2.2e-251 872.1 543 76.6
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 2.2e-251 872.1 541 75.8
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 5.0e-251 870.9 540 76.5
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 5.0e-251 870.9 534 77.5
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 1.9e-250 869.0 541 76.7
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 7.2e-250 867.1 546 76.0
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.7e-249 865.1 545 77.1
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 5.3e-245 850.9 548 76.6
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 1.1e-242 843.2 551 73.7
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 5.5e-242 840.9 540 74.3
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 9.4e-242 840.1 540 74.6
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.6e-241 839.3 538 74.3
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.4e-240 836.3 537 73.7
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.8e-240 835.9 550 72.5
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 8.8e-240 833.6 540 73.5
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 5.7e-239 830.9 541 73.4
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 9.8e-239 830.1 542 75.1
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 1.3e-238 829.7 537 73.9
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.3e-238 827.0 537 73.2
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 4.1e-237 824.7 538 73.2
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 9.1e-237 823.5 536 73.1
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 5.9e-236 820.8 538 72.7
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.0e-235 820.1 536 72.8
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 5.0e-235 817.8 540 72.2
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.0e-235 817.8 529 73.2
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 1.1e-234 816.6 539 72.9
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 5.5e-234 814.3 534 73.0
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 7.2e-234 813.9 535 72.5
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 2.6e-231 805.4 536 71.3
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 3.1e-229 798.5 536 72.8
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 5.4e-229 797.7 545 70.3
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 1.7e-227 792.7 560 69.6
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.2e-225 786.6 541 70.1
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.0e-224 783.5 558 67.9
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 2.0e-223 779.2 544 69.3
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 5.7e-223 777.7 532 69.7
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.3e-222 776.5 532 69.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.3e-222 776.5 540 69.8
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.7e-222 776.2 532 69.5
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 2.9e-222 775.4 556 68.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 3.7e-222 775.0 542 68.3
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.4e-221 773.1 498 73.5
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 1.5e-218 763.1 555 67.7
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.2e-215 753.4 559 66.7
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.9e-214 748.0 542 66.1
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 4.9e-214 748.0 541 66.4
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.4e-213 744.6 542 65.7
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 6.0e-212 741.1 542 65.7
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.1e-210 736.9 542 64.9
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.1e-208 728.8 542 64.9
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 3.1e-208 728.8 544 65.4
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 7.3e-202 707.6 560 60.2
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 7.3e-202 707.6 487 70.2
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 1.8e-200 703.0 551 61.5
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 9.9e-199 697.2 542 63.1
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 2.2e-198 696.0 544 63.1
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.5e-194 683.3 539 59.9
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.7e-193 678.3 543 62.2
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 1.1e-192 677.2 564 58.5
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 5.8e-191 671.4 562 59.1
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 5.8e-191 671.4 545 61.3
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 5.8e-191 671.4 545 61.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 9.9e-191 670.6 558 60.6
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 6.2e-185 651.4 549 59.0
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 3.8e-182 642.1 550 58.0
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 6.4e-182 641.3 551 58.4
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.4e-181 640.2 544 59.0
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.9e-181 639.8 556 58.3
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 9.3e-181 637.5 553 58.2
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 9.3e-181 637.5 556 57.6
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.1e-180 636.3 553 57.5
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 1.9e-178 629.8 549 57.9
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 3.3e-178 629.0 555 56.8
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 3.3e-178 629.0 554 57.4
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.6e-177 626.7 556 57.7
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 2.8e-177 625.9 547 58.0
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.1e-176 624.0 559 57.2
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.4e-176 622.9 465 63.7
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 2.6e-175 619.4 551 56.6
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 2.6e-175 619.4 551 56.6
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 3.8e-174 615.5 531 57.1
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 8.4e-174 614.4 551 56.3
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 1.1e-173 614.0 561 55.1
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 1.9e-173 613.2 544 57.4
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.9e-173 613.2 544 57.4
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 5.5e-173 611.7 562 55.5
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.2e-172 610.5 544 57.5
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 3.3e-170 602.4 544 57.0
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 8.1e-169 597.8 558 55.0
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.4e-168 596.3 574 52.3
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 2.9e-166 589.3 549 54.6
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.8e-163 580.1 550 53.8
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 7.6e-159 564.7 392 69.9
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.5e-157 559.7 566 52.1
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 5.5e-157 558.5 544 54.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.1e-156 556.6 467 56.5
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 2.0e-122 443.7 400 54.2
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.6e-85 319.3 316 51.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 1.5e-66 258.1 239 56.5
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.1e-51 208.8 151 62.9
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 6.7e-46 189.5 184 56.0
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.3e-45 186.8 375 32.5
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.4e-45 186.0 375 32.0
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.4e-45 186.0 375 32.0
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-44 185.3 375 32.0
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.2e-40 169.5 207 42.5
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.0e-30 139.0 383 25.3
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.0e-29 134.8 319 29.2
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.8e-28 131.0 184 38.6
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 6.5e-25 119.8 433 26.1
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.5e-17 93.2 327 26.3
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 6.5e-17 93.2 302 26.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.3e-11 73.6 150 30.0
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.0e-10 71.6 351 21.9
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.8e-09 67.4 357 21.3
SMO116G0125 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.2e-07 62.4 301 23.6
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 3.6e-07 60.8 46 67.4
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.4e-06 58.9 302 22.2
Cre12.g541211 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.3e-06 58.2 263 23.2
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 8.8e-06 56.2 98 33.7


User provided reference genes

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