Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 6.1e-125 451.1 266 100.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.4e-75 285.4 267 61.8
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 7.8e-72 274.6 262 62.6
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 7.8e-72 274.6 275 60.0
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.0e-71 274.2 264 62.1
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.3e-71 273.9 267 60.3
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 6.6e-71 271.6 266 59.4
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.5e-70 270.4 254 61.4
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 5.6e-70 268.5 266 59.8
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.2e-69 267.3 266 60.5
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.6e-69 266.9 268 60.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.6e-69 265.8 266 60.2
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 4.7e-69 265.4 266 59.4
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 4.7e-69 265.4 246 62.2
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 4.7e-69 265.4 254 61.4
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 6.2e-69 265.0 267 60.7
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 6.2e-69 265.0 255 61.2
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.4e-68 263.8 255 60.8
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.8e-68 263.5 268 60.1
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.4e-68 263.1 267 59.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 6.9e-68 261.5 266 59.4
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 9.0e-68 261.2 255 60.0
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 5.8e-67 258.5 267 58.8
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 9.9e-67 257.7 254 61.4
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 3.8e-66 255.8 255 59.2
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.9e-65 253.4 300 52.7
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 2.4e-65 253.1 261 60.2
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.4e-65 253.1 268 57.5
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.2e-65 252.7 261 60.2
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.4e-65 251.9 261 59.8
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 7.1e-65 251.5 271 58.3
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.2e-64 250.8 255 58.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.2e-64 250.8 255 59.2
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.0e-63 247.7 268 58.2
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.3e-63 247.3 259 57.9
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.3e-63 247.3 255 58.8
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.3e-63 247.3 254 57.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 6.6e-63 245.0 256 59.0
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.1e-62 244.2 267 55.8
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.9e-62 243.4 250 58.4
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.5e-62 243.0 250 58.0
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 2.5e-62 243.0 255 58.4
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.3e-62 242.7 254 57.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.3e-62 242.3 267 55.4
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.6e-62 241.9 263 57.0
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 9.6e-62 241.1 248 58.5
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.6e-62 241.1 267 55.1
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 9.6e-62 241.1 264 57.6
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.6e-61 240.4 259 57.1
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 6.2e-61 238.4 278 54.0
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 8.1e-61 238.0 250 57.2
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.4e-60 237.3 251 58.2
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 2.6e-59 233.0 261 54.8
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 2.6e-59 233.0 257 58.0
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 2.6e-59 233.0 319 51.1
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.5e-59 232.3 255 55.7
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 5.8e-59 231.9 254 56.7
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 5.8e-59 231.9 254 55.5
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 5.8e-59 231.9 243 57.6
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 7.6e-59 231.5 258 56.2
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 9.9e-59 231.1 262 53.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 2.9e-58 229.6 267 53.6
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 2.9e-58 229.6 225 61.3
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.9e-58 229.6 230 60.9
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 8.4e-58 228.0 243 57.2
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.1e-57 227.6 254 55.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.1e-57 227.6 270 53.7
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.1e-57 227.6 254 52.8
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.9e-57 226.9 247 57.1
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 3.2e-57 226.1 250 56.8
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.2e-57 225.7 255 52.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 4.2e-57 225.7 248 55.2
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 9.3e-57 224.6 243 56.4
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.2e-56 224.2 270 53.0
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.6e-56 223.8 266 52.6
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.0e-55 221.1 252 54.8
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.0e-55 221.1 255 53.7
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 3.9e-55 219.2 248 55.6
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.1e-54 217.6 261 53.6
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 5.6e-54 215.3 247 53.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 5.6e-54 215.3 254 53.5
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.6e-53 213.8 247 53.4
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.6e-53 213.8 254 53.5
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.1e-52 211.1 244 55.3
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.4e-52 210.7 254 52.8
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 2.4e-52 209.9 261 52.9
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 5.3e-52 208.8 249 53.0
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 5.3e-52 208.8 256 53.5
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 6.9e-52 208.4 243 53.5
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 6.9e-52 208.4 260 52.7
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.2e-51 207.6 256 53.1
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.2e-51 207.6 244 54.9
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.2e-51 207.6 258 50.8
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 3.4e-51 206.1 255 53.3
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 7.6e-51 204.9 249 53.8
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 3.2e-49 199.5 224 55.4
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 4.2e-49 199.1 167 67.1
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 5.5e-49 198.7 249 52.2
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-48 197.6 319 44.2
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.6e-48 197.2 220 55.9
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.1e-48 196.8 250 50.4
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 7.9e-48 194.9 250 50.0
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.3e-47 194.1 249 51.8
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 5.1e-47 192.2 249 51.0
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 5.1e-47 192.2 247 50.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.7e-47 191.4 157 69.4
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.9e-46 190.3 198 58.6
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 2.5e-46 189.9 254 51.6
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 3.3e-46 189.5 259 48.6
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.3e-46 189.1 368 41.0
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.3e-45 187.6 249 49.8
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.8e-45 186.4 249 49.8
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 1.1e-44 184.5 151 68.2
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.5e-43 180.6 254 48.0
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.2e-42 176.8 282 44.7
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 9.7e-38 161.4 206 51.0
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-36 157.9 219 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.8e-36 157.1 276 41.3
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.5e-35 154.1 150 60.0
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 3.4e-35 152.9 251 41.0
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.2e-34 150.2 254 43.3
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 2.9e-34 149.8 269 43.5
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.4e-33 147.5 147 60.5
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.0e-31 139.8 196 48.5
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 8.2e-29 131.7 88 80.7
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 8.2e-29 131.7 182 47.3
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.9e-26 123.2 187 43.3
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 2.9e-26 123.2 280 36.4
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.6e-24 116.3 74 78.4
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 8.8e-23 111.7 75 73.3
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 5.9e-19 99.0 146 45.9
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 2.5e-17 93.6 123 43.9
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 8.0e-16 88.6 53 86.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 7.4e-14 82.0 71 59.2
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 3.7e-13 79.7 45 86.7
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.8e-13 79.3 75 60.0
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-12 78.2 132 40.9
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-12 78.2 97 51.5
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.1e-12 76.3 137 40.9
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 7.0e-12 75.5 167 34.1
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 5.0e-10 69.3 86 50.0
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 2.7e-08 63.5 230 33.5
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 3.6e-08 63.2 47 63.8


User provided reference genes

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