Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 6.6e-131 470.7 235 100.0
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 4.2e-101 371.7 237 75.1
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 2.7e-100 369.0 237 75.5
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 2.7e-100 369.0 241 75.1
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 2.7e-100 369.0 237 75.5
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 4.6e-100 368.2 233 76.8
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 6.0e-100 367.9 237 75.1
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 5.1e-99 364.8 240 75.0
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 1.1e-98 363.6 238 76.9
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 1.1e-98 363.6 237 75.5
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 1.9e-98 362.8 237 74.3
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.5e-98 362.5 237 74.3
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.3e-98 362.1 236 73.7
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 3.3e-98 362.1 236 77.1
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 5.6e-98 361.3 240 74.2
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 7.3e-98 360.9 237 74.7
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 9.6e-98 360.5 236 74.6
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 1.6e-97 359.8 238 74.4
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.1e-97 359.4 236 74.2
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 2.8e-97 359.0 236 74.6
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 3.6e-97 358.6 238 73.9
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 6.2e-97 357.8 237 73.0
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 8.1e-97 357.5 236 72.5
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 8.1e-97 357.5 237 73.0
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 1.4e-96 356.7 236 73.3
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 3.1e-96 355.5 236 73.3
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 4.0e-96 355.1 238 73.5
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 6.9e-96 354.4 237 73.8
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 6.9e-96 354.4 240 72.1
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 1.2e-95 353.6 239 71.5
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.2e-95 353.6 241 72.2
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 2.6e-95 352.4 244 72.5
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 3.4e-95 352.1 236 72.5
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.4e-95 351.7 241 71.8
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.8e-95 351.3 237 72.2
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 7.6e-95 350.9 233 75.1
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 7.6e-95 350.9 237 73.8
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 1.7e-94 349.7 237 73.0
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 2.2e-94 349.4 242 71.9
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 3.8e-94 348.6 239 72.0
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 4.9e-94 348.2 239 72.0
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 4.9e-94 348.2 238 71.8
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 8.4e-94 347.4 238 71.8
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 8.4e-94 347.4 234 71.8
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 1.4e-93 346.7 306 60.8
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 1.9e-93 346.3 239 71.1
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 1.9e-93 346.3 238 71.0
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 3.2e-93 345.5 239 72.4
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 5.4e-93 344.7 235 75.3
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 7.1e-93 344.4 239 71.5
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 9.3e-93 344.0 237 70.9
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 2.1e-92 342.8 238 71.4
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 2.1e-92 342.8 234 70.5
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 6.0e-92 341.3 240 70.4
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 1.0e-91 340.5 236 70.8
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 1.0e-91 340.5 239 71.1
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 3.0e-91 339.0 235 71.5
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 1.1e-90 337.0 226 71.7
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.1e-90 337.0 236 69.9
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 2.5e-90 335.9 240 69.6
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 2.5e-90 335.9 194 81.4
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 3.3e-90 335.5 232 69.8
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 4.3e-90 335.1 240 69.6
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 5.6e-90 334.7 235 69.8
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 5.6e-90 334.7 226 72.1
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 9.6e-90 334.0 234 69.2
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.6e-89 333.2 232 72.8
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 3.6e-89 332.0 248 69.8
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 3.6e-89 332.0 234 68.8
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 1.4e-88 330.1 287 60.6
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 2.4e-88 329.3 216 73.1
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 2.4e-88 329.3 234 68.4
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 9.0e-88 327.4 240 68.3
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 2.0e-87 326.2 227 71.4
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 6.4e-86 321.2 199 77.9
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.1e-85 320.5 216 70.4
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 3.2e-85 318.9 216 69.9
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 2.1e-84 316.2 234 65.4
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 3.5e-84 315.5 206 71.8
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 7.9e-84 314.3 238 65.1
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 7.9e-84 314.3 209 73.7
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 1.1e-82 310.5 236 64.0
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 8.1e-81 304.3 220 67.3
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 1.8e-80 303.1 237 62.4
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 2.4e-80 302.8 222 68.0
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 6.9e-80 301.2 193 73.1
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 1.2e-79 300.4 225 66.7
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 1.5e-79 300.1 226 64.6
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 1.5e-79 300.1 239 63.6
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 2.0e-79 299.7 238 62.6
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 2.0e-79 299.7 238 62.6
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 3.4e-79 298.9 238 62.6
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 5.8e-79 298.1 232 64.7
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 5.8e-79 298.1 240 62.9
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 5.8e-79 298.1 240 62.9
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 4.9e-78 295.0 193 71.5
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 2.5e-77 292.7 228 62.7
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 4.2e-77 292.0 231 60.2
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 2.1e-76 289.7 224 63.8
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 2.3e-75 286.2 215 63.3
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 1.1e-72 277.3 230 60.0
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 1.8e-72 276.6 187 71.7
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 2.0e-71 273.1 199 65.8
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 1.0e-67 260.8 193 62.7
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 6.7e-67 258.1 195 62.1
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 8.7e-67 257.7 211 63.0
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 4.3e-66 255.4 197 67.0
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 2.2e-65 253.1 266 54.5
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 3.4e-63 245.7 231 54.5
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 5.1e-59 231.9 218 50.9
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 4.8e-57 225.3 142 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 1.4e-56 223.8 210 53.8
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 2.6e-55 219.5 186 58.1
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 3.2e-53 212.6 230 48.7
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 2.3e-51 206.5 141 70.2
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 3.0e-51 206.1 188 53.7
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 3.1e-48 196.1 127 72.4
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 1.1e-32 144.4 182 44.0
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 2.5e-29 133.3 206 40.8
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.2e-29 132.5 108 63.9
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.3e-25 120.9 249 32.5
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 1.9e-21 107.1 216 33.3
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 4.7e-20 102.4 230 34.8
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 1.6e-15 87.4 49 79.6
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 4.3e-13 79.3 60 60.0
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.2e-12 77.8 56 67.9
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 5.4e-08 62.4 34 79.4
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 7.8e-07 58.5 207 28.0


User provided reference genes

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