Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 2.2e-54 215.3 105 100.0
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 7.2e-21 104.0 96 55.2
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 9.4e-21 103.6 96 51.0
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-20 102.4 98 53.1
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.1e-20 102.4 98 53.1
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.1e-20 102.4 98 53.1
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.6e-20 101.7 89 55.1
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 4.7e-20 101.3 89 52.8
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 6.1e-20 100.9 104 51.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 6.1e-20 100.9 104 47.1
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.0e-19 100.1 101 49.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.4e-19 99.8 101 47.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.4e-19 99.8 96 44.8
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.4e-19 99.8 96 44.8
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.8e-19 99.4 98 51.0
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.8e-19 99.4 95 52.6
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 6.8e-19 97.4 104 47.1
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 8.8e-19 97.1 86 50.0
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.2e-18 96.7 99 51.5
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-18 96.3 89 55.1
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.0e-18 95.9 100 47.0
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.6e-18 95.5 87 51.7
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 4.4e-18 94.7 86 51.2
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.4e-18 94.7 88 50.0
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 5.7e-18 94.4 101 47.5
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 7.5e-18 94.0 93 54.8
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 7.5e-18 94.0 93 54.8
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 7.5e-18 94.0 102 46.1
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 9.8e-18 93.6 96 46.9
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.3e-17 93.2 99 47.5
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.3e-17 93.2 101 46.5
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.3e-17 93.2 96 44.8
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-17 92.8 93 53.8
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.7e-17 92.8 102 44.1
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.8e-17 92.0 87 47.1
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 2.8e-17 92.0 75 56.0
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.8e-17 92.0 98 48.0
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 3.7e-17 91.7 83 54.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.7e-17 91.7 102 47.1
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.7e-17 91.7 102 50.0
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 3.7e-17 91.7 85 50.6
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.7e-17 91.7 77 54.5
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 4.8e-17 91.3 99 48.5
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 6.3e-17 90.9 101 46.5
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 6.3e-17 90.9 98 46.9
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 6.3e-17 90.9 98 46.9
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 8.3e-17 90.5 82 56.1
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 8.3e-17 90.5 102 49.0
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 8.3e-17 90.5 102 46.1
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.1e-16 90.1 94 50.0
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 1.4e-16 89.7 90 44.4
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.4e-16 89.7 92 45.7
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.4e-16 89.7 86 51.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 1.8e-16 89.4 101 44.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.8e-16 89.4 85 50.6
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.8e-16 89.4 98 51.0
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.8e-16 89.4 101 47.5
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.4e-16 89.0 111 43.2
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.4e-16 89.0 98 43.9
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 3.1e-16 88.6 97 44.3
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 3.1e-16 88.6 102 49.0
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.1e-16 88.2 100 50.0
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.4e-16 87.8 71 57.7
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 7.0e-16 87.4 101 44.6
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 9.1e-16 87.0 96 47.9
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 9.1e-16 87.0 89 48.3
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.2e-15 86.7 95 48.4
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.2e-15 86.7 86 51.2
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 1.2e-15 86.7 101 44.6
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.2e-15 86.7 88 46.6
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.2e-15 86.7 85 50.6
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.2e-15 86.7 99 45.5
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.2e-15 86.7 101 44.6
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.2e-15 86.7 66 54.5
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 1.6e-15 86.3 104 43.3
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.6e-15 86.3 66 53.0
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.6e-15 86.3 90 41.1
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.6e-15 86.3 95 46.3
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 2.0e-15 85.9 64 59.4
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 2.7e-15 85.5 98 48.0
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 2.7e-15 85.5 86 50.0
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 3.5e-15 85.1 85 51.8
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.5e-15 85.1 85 52.9
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 3.5e-15 85.1 68 54.4
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.5e-15 84.7 94 45.7
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.5e-15 84.7 94 45.7
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 4.5e-15 84.7 63 61.9
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 4.5e-15 84.7 82 52.4
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 5.9e-15 84.3 101 38.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 5.9e-15 84.3 101 43.6
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 5.9e-15 84.3 98 48.0
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 5.9e-15 84.3 98 48.0
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 5.9e-15 84.3 98 48.0
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 5.9e-15 84.3 97 48.5
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 7.7e-15 84.0 85 45.9
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 7.7e-15 84.0 90 42.2
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.0e-14 83.6 94 43.6
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.2e-14 82.4 94 46.8
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 2.9e-14 82.0 64 56.2
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.9e-14 82.0 94 44.7
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 3.8e-14 81.6 89 41.6
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 3.8e-14 81.6 94 44.7
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.0e-14 81.3 92 45.7
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 8.5e-14 80.5 101 36.6
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.1e-13 80.1 86 47.7
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.5e-13 79.7 94 44.7
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 1.9e-13 79.3 96 43.8
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.9e-13 79.3 58 56.9
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 3.2e-13 78.6 93 43.0
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 4.2e-13 78.2 96 47.9
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 4.2e-13 78.2 85 45.9
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.5e-13 77.0 85 43.5
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.6e-12 76.3 95 47.4
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.1e-12 75.9 63 50.8
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.7e-12 75.5 72 43.1
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 3.6e-12 75.1 94 40.4
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 4.7e-12 74.7 103 43.7
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.8e-11 72.8 84 47.6
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.3e-11 72.4 96 41.7
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.0e-11 71.6 94 39.4
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 5.2e-11 71.2 90 41.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 5.2e-11 71.2 90 41.1
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 6.8e-11 70.9 90 40.0
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 6.8e-11 70.9 90 40.0
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 6.8e-11 70.9 93 38.7
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.6e-10 68.9 95 40.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 5.7e-10 67.8 83 42.2
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 9.8e-10 67.0 71 45.1
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 9.8e-10 67.0 90 41.1
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.7e-09 65.1 95 33.7
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.7e-09 65.1 95 40.0
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 3.7e-09 65.1 85 44.7
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 3.1e-08 62.0 86 36.0
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 5.9e-07 57.8 63 39.7
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 1.0e-06 57.0 86 34.9
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 2.3e-06 55.8 63 42.9
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 8.6e-06 53.9 89 31.5


User provided reference genes

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