Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03180 Coffea canephora HOM05D007270 ORTHO05D009126 1.7e-65 252.7 138 100.0
Dinv28460 Davidia involucrata HOM05D007270 ORTHO05D009126 3.6e-20 102.1 115 54.8
MSTRG.8447 Avicennia marina HOM05D007270 ORTHO05D009126 1.2e-18 97.1 102 57.8
Migut.F00356 Erythranthe guttata HOM05D007270 ORTHO05D009126 1.2e-18 97.1 108 56.5
Sopen03g004830 Solanum pennellii HOM05D007270 ORTHO05D009126 1.3e-17 93.6 112 55.4
Dinv35199 Davidia involucrata HOM05D007270 ORTHO05D009126 2.2e-17 92.8 116 52.6
Solyc03g026000.4 Solanum lycopersicum HOM05D007270 ORTHO05D009126 4.9e-17 91.7 112 54.5
PGSC0003DMG400014284 Solanum tuberosum HOM05D007270 ORTHO05D009126 8.3e-17 90.9 112 52.7
Nitab4.5_0000716g0240 Nicotiana tabacum HOM05D007270 ORTHO05D009126 9.2e-16 87.4 109 59.6
Hma1.2p1_0270F.1_g108240 Hydrangea macrophylla HOM05D007270 ORTHO05D009126 1.6e-15 86.7 113 51.3
Hma1.2p1_2094F.1_g313960 Hydrangea macrophylla HOM05D007270 ORTHO05D009126 3.5e-15 85.5 100 52.0
Nitab4.5_0001508g0050 Nicotiana tabacum HOM05D007270 ORTHO05D009126 1.0e-14 84.0 107 54.2
Actinidia03115 Actinidia chinensis HOM05D007270 ORTHO05D009126 3.0e-14 82.4 125 44.0
Peaxi162Scf00915g00024 Petunia axillaris HOM05D007270 ORTHO05D009126 3.0e-14 82.4 113 48.7
Glyma.16G196000 Glycine max HOM05D007270 ORTHO05D009126 3.9e-14 82.0 103 49.5
Duzib084G1249 Durio zibethinus HOM05D007270 ORTHO05D009126 6.6e-14 81.3 111 49.5
Gorai.008G279000 Gossypium raimondii HOM05D007270 ORTHO05D009126 1.5e-13 80.1 120 45.8
Phvul.004G119400 Phaseolus vulgaris HOM05D007270 ORTHO05D009126 1.9e-13 79.7 98 54.1
CsaV3_3G016970 Cucumis sativus L. HOM05D007270 ORTHO05D009126 4.3e-13 78.6 115 44.3
Gohir.A12G259600 Gossypium hirsutum HOM05D007270 ORTHO05D009126 4.3e-13 78.6 120 45.8
Oeu061638.1 Olea europaea HOM05D007270 ORTHO05D009126 4.3e-13 78.6 106 46.2
Hma1.2p1_1323F.1_g275600 Hydrangea macrophylla HOM05D007270 ORTHO05D009126 5.6e-13 78.2 67 59.7
Lj2g0001956 Lotus japonicus HOM05D007270 ORTHO05D009126 5.6e-13 78.2 107 48.6
Manes.14G027400 Manihot esculenta HOM05D007270 ORTHO05D009126 5.6e-13 78.2 119 45.4
CANSAT21G0701 Cannabis sativa HOM05D007270 ORTHO05D009126 9.5e-13 77.4 115 45.2
COL.COLO4_14286 Corchorus olitorius HOM05D007270 ORTHO05D009126 1.2e-12 77.0 125 44.0
Medtr0022s0200 Medicago truncatula HOM05D007270 ORTHO05D009126 1.2e-12 77.0 103 42.7
Glyma.09G143000 Glycine max HOM05D007270 ORTHO05D009126 1.6e-12 76.6 103 48.5
Gohir.D12G260400 Gossypium hirsutum HOM05D007270 ORTHO05D009126 3.6e-12 75.5 120 44.2
Haze_13735 Corylus avellana HOM05D007270 ORTHO05D009126 4.7e-12 75.1 126 41.3
LjContig00238g0018696 Lotus japonicus HOM05D007270 ORTHO05D009126 4.7e-12 75.1 111 44.1
MSTRG.27125 Avicennia marina HOM05D007270 ORTHO05D009126 8.1e-12 74.3 110 46.4
Sabra12G0104200 Salix brachista HOM05D007270 ORTHO05D009126 8.1e-12 74.3 116 41.4
Psat0ss2830g0200 Pisum sativum HOM05D007270 ORTHO05D009126 1.1e-11 73.9 114 39.5
MD07G1266700 Malus domestica HOM05D007270 ORTHO05D009126 1.4e-11 73.6 121 45.5
VMungo0464G2153 Vigna mungo HOM05D007270 ORTHO05D009126 1.4e-11 73.6 116 44.8
Potri.015G140800 Populus trichocarpa HOM05D007270 ORTHO05D009126 1.8e-11 73.2 118 43.2
arahy.Tifrunner.gnm1.ann1.89K6QE Arachis hypogaea HOM05D007270 ORTHO05D009126 4.0e-11 72.0 107 43.0
ClCG05G007940 Citrullus lanatus HOM05D007270 ORTHO05D009126 5.2e-11 71.6 88 50.0
Gohir.D09G041400 Gossypium hirsutum HOM05D007270 ORTHO05D009126 5.2e-11 71.6 121 44.6
Gorai.006G047600 Gossypium raimondii HOM05D007270 ORTHO05D009126 6.8e-11 71.2 122 41.8
DCAR_018187 Daucus carota HOM05D007270 ORTHO05D009126 2.0e-10 69.7 117 44.4
Sed0022823 Sechium edule HOM05D007270 ORTHO05D009126 2.0e-10 69.7 111 46.8
CiPaw.03G104500 Carya illinoinensis HOM05D007270 ORTHO05D009126 2.6e-10 69.3 108 48.1
Eucgr.K00240 Eucalyptus grandis HOM05D007270 ORTHO05D009126 2.6e-10 69.3 110 41.8
Gohir.A08G100400 Gossypium hirsutum HOM05D007270 ORTHO05D009126 2.6e-10 69.3 107 45.8
Gohir.D08G111600 Gossypium hirsutum HOM05D007270 ORTHO05D009126 2.6e-10 69.3 107 45.8
QL09p014589 Quercus lobata HOM05D007270 ORTHO05D009126 2.6e-10 69.3 109 43.1
TWI39G0237 Tripterygium wilfordii HOM05D007270 ORTHO05D009126 2.6e-10 69.3 111 41.4
TAR375G1025 Trochodendron aralioides HOM05D007270 ORTHO05D009126 4.4e-10 68.6 98 42.9
Thecc.03G173300 Theobroma cacao HOM05D007270 ORTHO05D009126 5.8e-10 68.2 120 42.5
Prupe.2G292300 Prunus persica HOM05D007270 ORTHO05D009126 7.5e-10 67.8 113 45.1
Eucgr.A02802 Eucalyptus grandis HOM05D007270 ORTHO05D009126 1.3e-09 67.0 111 39.6
Sed0026018 Sechium edule HOM05D007270 ORTHO05D009126 2.9e-09 65.9 115 43.5
Gorai.004G119700 Gossypium raimondii HOM05D007270 ORTHO05D009126 3.7e-09 65.5 107 43.9
ECA232G2863 Erigeron canadensis HOM05D007270 ORTHO05D009126 4.9e-09 65.1 115 40.0
HanXRQChr09g0253491 Helianthus annuus HOM05D007270 ORTHO05D009126 4.9e-09 65.1 107 37.4
SalBow4G1292 Salvia bowleyana HOM05D007270 ORTHO05D009126 4.9e-09 65.1 109 44.0
TPR.G10771 Trifolium pratense HOM05D007270 ORTHO05D009126 4.9e-09 65.1 112 41.1
MD01G1198900 Malus domestica HOM05D007270 ORTHO05D009126 6.4e-09 64.7 121 40.5
CDE02G2351 Ceratophyllum demersum HOM05D007270 ORTHO05D009126 8.3e-09 64.3 108 38.9
Lalb_Chr06g0161061 Lupinus albus HOM05D007270 ORTHO05D009126 1.1e-08 63.9 112 42.0
Nn1g01405 Nelumbo nucifera HOM05D007270 ORTHO05D009126 1.1e-08 63.9 104 41.3
Atru.chr1.483 Acer truncatum HOM05D007270 ORTHO05D009126 1.9e-08 63.2 96 44.8
TWI23G0245 Tripterygium wilfordii HOM05D007270 ORTHO05D009126 1.9e-08 63.2 110 40.9
arahy.Tifrunner.gnm1.ann1.Y59FV0 Arachis hypogaea HOM05D007270 ORTHO05D009126 2.4e-08 62.8 126 39.7
TAR374G0261 Trochodendron aralioides HOM05D007270 ORTHO05D009126 3.2e-08 62.4 121 34.7
Duzib068G0291 Durio zibethinus HOM05D007270 ORTHO05D009126 4.1e-08 62.0 110 41.8
Duzib205G1728 Durio zibethinus HOM05D007270 ORTHO05D009126 4.1e-08 62.0 112 45.5
SalBow4G1320 Salvia bowleyana HOM05D007270 ORTHO05D009126 4.1e-08 62.0 110 43.6
Ciclev10006265m.g Citrus clementina HOM05D007270 ORTHO05D009126 7.1e-08 61.2 106 39.6
PGR142G1670 Punica granatum HOM05D007270 ORTHO05D009126 1.6e-07 60.1 89 42.7
Cfa008302 Carpinus fangiana HOM05D007270 ORTHO05D009126 2.1e-07 59.7 91 45.1
CiPaw.04G065800 Carya illinoinensis HOM05D007270 ORTHO05D009126 2.1e-07 59.7 100 46.0
Glyma.10G237600 Glycine max HOM05D007270 ORTHO05D009126 3.5e-07 58.9 107 37.4
Lsat_1_v5_gn_0_29801 Lactuca sativa HOM05D007270 ORTHO05D009126 4.6e-07 58.5 115 38.3
Gohir.A09G040765 Gossypium hirsutum HOM05D007270 ORTHO05D009126 6.0e-07 58.2 68 45.6
Lsat_1_v5_gn_0_29881 Lactuca sativa HOM05D007270 ORTHO05D009126 6.0e-07 58.2 108 41.7
PSO478G4124 Papaver somniferum HOM05D007270 ORTHO05D009126 7.8e-07 57.8 122 38.5
FAN01G3083 Fragaria x ananassa HOM05D007270 ORTHO05D009126 1.0e-06 57.4 106 41.5
RcHm_v2.0_Chr1g0376981 Rosa chinensis HOM05D007270 ORTHO05D009126 1.0e-06 57.4 102 39.2
FAN03G3015 Fragaria x ananassa HOM05D007270 ORTHO05D009126 1.3e-06 57.0 106 41.5
Glyma.20G157001 Glycine max HOM05D007270 ORTHO05D009126 1.3e-06 57.0 91 42.9
Lsat_1_v5_gn_0_29861 Lactuca sativa HOM05D007270 ORTHO05D009126 1.3e-06 57.0 117 35.9
CDE11G1162 Ceratophyllum demersum HOM05D007270 ORTHO05D009126 1.7e-06 56.6 111 35.1
FAN03G0438 Fragaria x ananassa HOM05D007270 ORTHO05D009126 1.7e-06 56.6 123 39.0
EL10Ac3g05666 Beta vulgaris HOM05D007270 ORTHO05D009126 2.3e-06 56.2 96 38.5
FAN10G3505 Fragaria x ananassa HOM05D007270 ORTHO05D009126 2.3e-06 56.2 106 40.6
Sc13g0008530 Simmondsia chinensis HOM05D007270 ORTHO05D009126 2.3e-06 56.2 91 40.7
arahy.Tifrunner.gnm1.ann1.LNQ50U Arachis hypogaea HOM05D007270 ORTHO05D009126 3.0e-06 55.8 84 44.0
FAN06G1959 Fragaria x ananassa HOM05D007270 ORTHO05D009126 5.1e-06 55.1 102 40.2
FAN06G2673 Fragaria x ananassa HOM05D007270 ORTHO05D009126 5.1e-06 55.1 102 40.2
Aqoxy7G00397 Aquilegia oxysepala HOM05D007270 ORTHO05D009126 6.6e-06 54.7 119 34.5
Gohir.D12G069603 Gossypium hirsutum HOM05D007270 ORTHO05D009126 6.6e-06 54.7 69 49.3
VMungo0481G0001 Vigna mungo HOM05D007270 ORTHO05D009126 6.6e-06 54.7 111 37.8
Ca_10783_v3 Cicer arietinum L. HOM05D007270 ORTHO05D009126 8.6e-06 54.3 101 38.6
MBI04_g04728_MAGBIO Magnolia biondii HOM05D007270 ORTHO05D009126 8.6e-06 54.3 89 41.6


User provided reference genes

Program Settings