Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.4e-32 142.1 63 100.0
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 5.6e-29 130.2 63 90.5
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 7.4e-29 129.8 63 88.9
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 9.6e-29 129.4 63 88.9
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 3.7e-28 127.5 63 87.3
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.8e-28 127.1 63 85.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.8e-28 127.1 63 85.7
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.8e-28 127.1 63 87.3
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 4.8e-28 127.1 63 85.7
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 8.1e-28 126.3 63 85.7
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.4e-27 125.6 63 85.7
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.8e-27 125.2 62 85.5
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.4e-27 124.8 61 88.5
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 3.1e-27 124.4 63 85.7
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 3.1e-27 124.4 63 85.7
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 3.1e-27 124.4 66 83.3
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 3.1e-27 124.4 62 85.5
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 4.0e-27 124.0 63 82.5
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 4.0e-27 124.0 63 84.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.0e-27 124.0 62 85.5
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 4.0e-27 124.0 63 85.7
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 4.0e-27 124.0 63 84.1
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 5.3e-27 123.6 63 84.1
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 5.3e-27 123.6 63 82.5
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.3e-27 123.6 61 86.9
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.3e-27 123.6 61 86.9
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.3e-27 123.6 61 86.9
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.3e-27 123.6 61 86.9
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 5.3e-27 123.6 63 81.0
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 5.3e-27 123.6 61 86.9
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 6.9e-27 123.2 63 84.1
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 6.9e-27 123.2 62 85.5
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 9.0e-27 122.9 61 85.2
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 9.0e-27 122.9 61 85.2
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 9.0e-27 122.9 61 85.2
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 9.0e-27 122.9 63 82.5
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.2e-26 122.5 61 83.6
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.2e-26 122.5 62 85.5
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.5e-26 122.1 61 83.6
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.5e-26 122.1 62 80.6
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.5e-26 122.1 62 80.6
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.5e-26 122.1 63 84.1
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.5e-26 122.1 63 81.0
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.5e-26 122.1 62 83.9
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.5e-26 122.1 62 83.9
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.5e-26 122.1 63 79.4
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.5e-26 122.1 63 79.4
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.5e-26 122.1 63 84.1
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-26 121.7 61 83.6
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-26 121.7 61 83.6
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-26 121.7 61 83.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 2.0e-26 121.7 61 83.6
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.0e-26 121.7 61 83.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 2.0e-26 121.7 61 83.6
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.0e-26 121.7 63 84.1
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.0e-26 121.7 63 82.5
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.0e-26 121.7 63 82.5
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.6e-26 121.3 59 86.4
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.6e-26 121.3 62 83.9
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 2.6e-26 121.3 61 83.6
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-26 121.3 61 83.6
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.6e-26 121.3 61 83.6
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.6e-26 121.3 61 83.6
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.6e-26 121.3 61 83.6
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.6e-26 121.3 63 81.0
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 2.6e-26 121.3 63 81.0
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.6e-26 121.3 63 81.0
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 2.6e-26 121.3 62 83.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 2.6e-26 121.3 61 82.0
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 2.6e-26 121.3 63 81.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.6e-26 121.3 63 81.0
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.4e-26 120.9 63 84.1
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 3.4e-26 120.9 62 82.3
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.4e-26 120.9 63 81.0
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.4e-26 120.9 63 84.1
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 4.5e-26 120.6 62 83.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.5e-26 120.6 63 79.4
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 4.5e-26 120.6 63 81.0
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 4.5e-26 120.6 62 83.9
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 4.5e-26 120.6 63 81.0
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 4.5e-26 120.6 63 79.4
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 4.5e-26 120.6 63 79.4
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 4.5e-26 120.6 63 79.4
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 5.8e-26 120.2 63 79.4
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 5.8e-26 120.2 63 81.0
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.7e-25 118.6 61 82.0
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-25 118.6 61 82.0
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.7e-25 118.6 61 82.0
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.2e-25 118.2 63 76.2
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 2.9e-25 117.9 62 82.3
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.9e-25 117.9 63 77.8
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 3.8e-25 117.5 61 80.3
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 3.8e-25 117.5 62 80.6
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 3.8e-25 117.5 64 81.2
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 3.8e-25 117.5 62 80.6
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.8e-25 117.5 62 80.6
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 6.5e-25 116.7 60 83.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 8.4e-25 116.3 63 76.2
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 8.4e-25 116.3 63 73.0
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 1.1e-24 115.9 62 77.4
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.9e-24 115.2 63 74.6
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.5e-24 114.8 61 77.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.3e-22 109.0 61 72.1
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 1.8e-22 108.6 81 63.0
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 4.8e-20 100.5 59 71.2
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.5e-18 95.5 56 67.9
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 7.6e-18 93.2 133 40.6
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 5.0e-17 90.5 56 67.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 2.8e-12 74.7 38 84.2
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.8e-12 73.9 39 82.1
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.4e-11 72.4 60 53.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-11 72.4 40 77.5
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.8e-11 72.0 38 81.6
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.8e-11 72.0 38 81.6
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.8e-11 72.0 38 81.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.8e-11 72.0 38 81.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.8e-11 72.0 40 75.0
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 2.4e-11 71.6 38 76.3
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.4e-11 71.6 39 79.5
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.1e-11 70.9 38 78.9
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 4.1e-11 70.9 38 78.9
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 4.1e-11 70.9 38 78.9
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 4.1e-11 70.9 38 78.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 4.1e-11 70.9 40 77.5
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 4.1e-11 70.9 38 78.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.3e-11 70.5 39 74.4
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 6.9e-11 70.1 38 78.9
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 9.1e-11 69.7 38 76.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 9.1e-11 69.7 38 78.9
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 1.2e-10 69.3 38 71.1
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.2e-10 69.3 38 76.3
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.2e-10 69.3 38 78.9
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.2e-10 69.3 40 72.5
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.5e-10 68.9 39 69.2
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.5e-10 68.9 38 78.9
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 3.4e-10 67.8 38 73.7
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 5.9e-10 67.0 53 54.7
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 8.5e-09 63.2 58 56.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.4e-08 62.4 36 75.0


User provided reference genes

Program Settings