Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 7.8e-135 483.8 245 100.0
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 2.4e-51 206.5 260 49.6
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.0e-41 174.5 261 46.0
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 1.7e-41 173.7 257 45.1
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 3.9e-41 172.6 270 44.4
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 8.6e-41 171.4 265 44.5
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 1.1e-40 171.0 266 45.5
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 7.3e-40 168.3 260 44.2
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 9.5e-40 167.9 259 44.8
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 4.7e-39 165.6 261 44.8
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 1.2e-37 161.0 264 42.4
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 1.7e-36 157.1 250 41.6
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 4.6e-34 149.1 254 43.3
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 4.6e-34 149.1 253 41.1
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 7.8e-34 148.3 265 41.1
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 7.3e-32 141.7 166 52.4
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 1.2e-31 141.0 253 41.1
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 2.1e-31 140.2 256 39.1
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 3.6e-31 139.4 247 43.7
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 3.6e-31 139.4 247 43.7
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 5.2e-30 135.6 248 37.9
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 3.4e-29 132.9 257 36.6
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 4.4e-29 132.5 264 37.1
Peaxi162Scf00444g00014 Petunia axillaris HOM05D006494 ORTHO05D007787 5.8e-29 132.1 258 39.1
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 7.5e-29 131.7 201 46.3
ECA232G4003 Erigeron canadensis HOM05D006494 ORTHO05D007787 2.9e-28 129.8 216 42.6
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 2.9e-28 129.8 244 39.3
Oeu022606.1 Olea europaea HOM05D006494 ORTHO05D007787 3.7e-28 129.4 254 37.8
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.1e-27 127.9 254 36.6
Actinidia08572 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.4e-27 126.7 149 52.3
CSS0030697 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 4.1e-27 125.9 159 52.2
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 4.1e-27 125.9 273 36.3
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 5.4e-27 125.6 206 42.7
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 7.1e-27 125.2 165 47.3
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 7.1e-27 125.2 218 42.2
Oeu006795.1 Olea europaea HOM05D006494 ORTHO05D007787 1.2e-26 124.4 252 38.1
PGSC0003DMG400029922 Solanum tuberosum HOM05D006494 ORTHO05D007787 1.2e-26 124.4 244 39.3
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 7.8e-26 121.7 261 34.9
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 1.0e-25 121.3 273 37.0
HanXRQChr09g0252471 Helianthus annuus HOM05D006494 ORTHO05D007787 1.0e-25 121.3 244 38.1
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 2.3e-25 120.2 252 35.7
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 3.9e-25 119.4 259 36.7
DCAR_020265 Daucus carota HOM05D006494 ORTHO05D007787 1.1e-24 117.9 261 38.3
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.9e-24 117.1 252 35.3
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 1.9e-24 117.1 199 42.7
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 2.5e-24 116.7 260 37.7
Peaxi162Scf00618g00753 Petunia axillaris HOM05D006494 ORTHO05D007787 3.3e-24 116.3 294 32.7
CSS0049923 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 1.2e-23 114.4 249 38.6
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 2.8e-23 113.2 209 40.7
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 2.8e-23 113.2 275 34.9
Migut.F00309 Erythranthe guttata HOM05D006494 ORTHO05D007787 8.1e-23 111.7 253 36.0
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 1.2e-21 107.8 247 34.0
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 1.2e-21 107.8 260 34.2
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.2e-21 107.8 206 38.8
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 1.5e-21 107.5 246 34.1
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 1.5e-21 107.5 211 39.3
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 3.4e-21 106.3 149 45.0
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 4.4e-21 105.9 261 35.2
Nitab4.5_0000572g0070 Nicotiana tabacum HOM05D006494 ORTHO05D007787 5.8e-21 105.5 233 36.1
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 9.9e-21 104.8 200 39.5
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 6.4e-20 102.1 210 38.6
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 1.1e-19 101.3 192 38.0
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 1.1e-19 101.3 260 33.5
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.4e-19 100.9 261 34.5
Nn6g33336 Nelumbo nucifera HOM05D006494 ORTHO05D007787 1.4e-19 100.9 214 39.3
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 1.6e-18 97.4 246 35.0
unitig_46.g18800 Utricularia gibba HOM05D006494 ORTHO05D007787 1.6e-18 97.4 196 36.7
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 4.6e-18 95.9 199 37.7
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 6.0e-18 95.5 227 33.9
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 6.0e-18 95.5 163 40.5
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 7.8e-18 95.1 214 36.4
PGSC0003DMG400017033 Solanum tuberosum HOM05D006494 ORTHO05D007787 2.3e-17 93.6 132 50.0
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 3.9e-17 92.8 200 35.5
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 8.7e-17 91.7 272 30.5
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 1.9e-16 90.5 264 33.7
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 1.9e-16 90.5 185 37.8
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 1.9e-16 90.5 276 34.1
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 2.5e-16 90.1 259 32.4
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 4.3e-16 89.4 257 33.1
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 9.6e-16 88.2 245 31.4
Lsat_1_v5_gn_9_57501 Lactuca sativa HOM05D006494 ORTHO05D007787 1.2e-15 87.8 240 31.2
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 1.1e-14 84.7 246 31.7
FAN14G1471 Fragaria x ananassa HOM05D006494 ORTHO05D007787 6.9e-14 82.0 251 29.9
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 9.0e-14 81.6 246 31.3
FvH4_6g37300 Fragaria vesca HOM05D006494 ORTHO05D007787 9.0e-14 81.6 251 29.9
FAN08G0782 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.5e-13 80.9 150 38.7
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 2.6e-13 80.1 271 29.2
FvH4_5g32440 Fragaria vesca HOM05D006494 ORTHO05D007787 4.4e-13 79.3 150 38.7
FAN13G0811 Fragaria x ananassa HOM05D006494 ORTHO05D007787 5.8e-13 79.0 150 38.0
FAN18G4076 Fragaria x ananassa HOM05D006494 ORTHO05D007787 7.6e-13 78.6 150 38.7
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 7.6e-13 78.6 266 30.5
Lalb_Chr21g0305211 Lupinus albus HOM05D006494 ORTHO05D007787 2.2e-12 77.0 224 31.7
Sed0010736 Sechium edule HOM05D006494 ORTHO05D007787 2.2e-12 77.0 249 32.9
RcHm_v2.0_Chr3g0486201 Rosa chinensis HOM05D006494 ORTHO05D007787 4.9e-12 75.9 246 31.7
SHI13763 Sapria himalayana HOM05D000481 ORTHO05D003804 1.1e-11 74.7 214 31.3
FAN05G4065 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.4e-11 74.3 251 28.7
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 3.2e-11 73.2 222 31.1
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 5.4e-11 72.4 209 32.5
FAN02G3807 Fragaria x ananassa HOM05D006494 ORTHO05D007787 9.3e-11 71.6 150 35.3
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 4.6e-10 69.3 218 32.6
CiPaw.12G091000 Carya illinoinensis HOM05D006494 ORTHO05D007787 1.0e-09 68.2 314 25.8
PSO478G4343 Papaver somniferum HOM05D006494 ORTHO05D007787 1.5e-08 64.3 210 29.0
Psat0s2528g0040 Pisum sativum HOM05D006494 ORTHO05D007787 5.6e-08 62.4 263 27.8
Potri.004G101600 Populus trichocarpa HOM05D006494 ORTHO05D007787 2.1e-07 60.5 114 36.0
FvH4_6g24000 Fragaria vesca HOM05D006494 ORTHO05D007787 4.8e-07 59.3 149 33.6
FAN14G4923 Fragaria x ananassa HOM05D006494 ORTHO05D007787 4.8e-07 59.3 149 33.6
RcHm_v2.0_Chr3g0482721 Rosa chinensis HOM05D006494 ORTHO05D007787 4.8e-07 59.3 149 36.2
FAN05G2781 Fragaria x ananassa HOM05D000001 ORTHO05D009295 8.1e-07 58.5 199 30.7
PSO063G3044 Papaver somniferum HOM05D006494 ORTHO05D007787 1.1e-06 58.2 218 30.3
Sopen06g011990 Solanum pennellii HOM05D006494 ORTHO05D007787 1.1e-06 58.2 149 31.5
GSVIVG01034561001 Vitis vinifera HOM05D006494 ORTHO05D007787 1.8e-06 57.4 121 37.2


User provided reference genes

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