Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.8e-159 565.8 277 100.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.8e-74 283.5 293 52.2
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.8e-71 273.5 289 52.6
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.4e-71 273.1 296 49.0
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 3.1e-71 272.7 308 50.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.9e-71 271.6 291 49.5
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 4.5e-70 268.9 287 50.2
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.0e-69 267.7 284 49.3
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.0e-69 267.7 286 49.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.2e-69 266.5 287 49.5
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 8.4e-69 264.6 297 49.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 8.4e-69 264.6 297 49.2
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 8.4e-69 264.6 291 48.8
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.1e-68 264.2 290 49.7
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.5e-68 263.1 290 49.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.5e-68 263.1 286 50.3
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.1e-67 260.0 297 47.5
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 2.7e-67 259.6 286 48.6
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.0e-67 258.5 290 49.0
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.0e-66 257.7 293 48.8
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.0e-66 257.7 286 49.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.1e-66 255.4 291 48.8
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 8.7e-66 254.6 287 48.8
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.5e-65 253.8 291 48.1
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.5e-65 253.8 290 48.3
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.9e-65 253.4 306 46.1
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.5e-65 253.1 300 47.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.3e-65 252.7 286 47.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 4.3e-65 252.3 282 49.3
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 5.7e-65 251.9 285 49.1
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.3e-64 250.8 286 46.9
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 6.3e-64 248.4 290 49.3
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.3e-64 248.4 290 49.3
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.4e-63 247.3 297 46.5
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.8e-63 246.9 284 47.2
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.4e-63 246.5 288 47.9
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.1e-63 246.1 291 45.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.9e-63 245.0 290 49.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 6.9e-63 245.0 297 47.8
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.0e-63 244.6 290 47.9
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 9.0e-63 244.6 285 47.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-62 244.2 290 48.6
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.2e-62 244.2 293 45.4
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.0e-62 243.4 293 46.1
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 3.4e-62 242.7 291 47.1
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 4.5e-62 242.3 290 45.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.9e-62 241.9 274 48.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.7e-61 240.4 292 46.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.7e-61 240.4 267 47.9
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.2e-61 240.0 288 46.5
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.8e-61 239.2 286 46.2
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 3.8e-61 239.2 292 46.6
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 8.5e-61 238.0 284 47.5
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.4e-60 237.3 320 43.8
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.5e-60 236.5 292 46.6
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.5e-60 236.5 294 45.6
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.2e-60 235.7 293 46.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.2e-60 235.7 270 48.9
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 5.5e-60 235.3 293 46.1
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 5.5e-60 235.3 290 43.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 7.2e-60 235.0 290 43.8
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 9.3e-60 234.6 296 45.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 3.6e-59 232.6 296 43.9
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.3e-58 230.7 289 46.4
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 3.9e-58 229.2 281 47.3
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.8e-56 223.0 288 43.1
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 3.7e-56 222.6 242 50.0
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.5e-54 217.2 278 44.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 3.4e-54 216.1 232 49.1
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.3e-53 214.2 262 45.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.4e-50 204.1 270 45.2
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.1e-49 201.1 204 52.9
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.5e-49 200.7 268 44.4
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.5e-49 200.7 288 39.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 4.1e-47 192.6 268 43.3
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.3e-47 192.2 162 61.1
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.0e-46 190.3 162 58.0
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.3e-45 187.6 310 39.7
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.2e-45 186.8 270 42.6
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 5.0e-45 185.7 270 42.2
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 6.5e-45 185.3 270 42.2
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.9e-44 183.7 270 42.2
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.2e-43 181.0 270 42.6
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.6e-43 180.6 149 61.1
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.7e-43 179.9 279 39.8
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.7e-42 175.3 276 38.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.7e-42 175.3 196 47.4
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.8e-39 167.2 227 41.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.8e-39 167.2 146 59.6
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.6e-38 163.3 234 43.2
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.2e-36 156.0 200 44.5
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 5.5e-36 155.6 214 42.1
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 2.1e-35 153.7 277 34.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 6.1e-35 152.1 226 39.4
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 6.1e-35 152.1 222 41.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 8.2e-32 141.7 266 36.5
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 2.0e-30 137.1 247 37.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.5e-30 136.3 182 41.8
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 5.9e-30 135.6 211 37.9
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 5.9e-30 135.6 206 37.4
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 6.5e-29 132.1 207 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 8.5e-29 131.7 263 30.8
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.5e-28 131.0 283 34.6
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.1e-27 127.1 239 36.4
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.7e-27 126.7 92 67.4
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.5e-25 120.9 138 48.6
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.0e-25 120.6 182 35.7
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.4e-25 119.8 192 38.5
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.4e-25 119.8 109 60.6
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 8.3e-24 115.2 75 78.7
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.1e-23 114.8 202 35.1
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 7.0e-23 112.1 296 30.7
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-22 111.3 123 53.7
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.5e-22 109.4 108 57.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 3.8e-21 106.3 110 50.0
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 2.5e-20 103.6 347 23.6
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.4e-17 93.2 81 54.3
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.4e-17 93.2 81 54.3
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.3e-16 91.3 119 43.7
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.7e-13 80.9 103 38.8
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.7e-13 80.9 58 70.7
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 6.6e-13 79.0 64 65.6
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 8.6e-13 78.6 197 28.9
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.9e-12 77.4 64 64.1
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 1.8e-10 70.9 155 31.0
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 6.8e-10 68.9 92 35.9
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.6e-09 67.0 57 61.4
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 3.7e-08 63.2 48 54.2


User provided reference genes

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