Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 0.0e+00 1255.4 632 100.0
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 3.6e-256 888.3 637 71.3
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.3e-255 885.6 668 69.0
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.3e-253 879.8 689 67.3
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 2.8e-253 878.6 667 70.0
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.9e-249 865.9 657 68.5
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 3.6e-248 861.7 649 67.8
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 3.6e-248 861.7 649 67.6
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 4.6e-248 861.3 667 67.6
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.0e-247 860.1 656 67.5
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 2.0e-246 855.9 649 68.4
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 9.7e-246 853.6 661 66.1
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.3e-242 843.2 653 67.2
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.2e-242 842.4 657 67.3
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.9e-242 842.0 652 67.6
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 2.3e-239 832.4 648 66.7
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 6.7e-239 830.9 647 66.2
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 6.7e-239 830.9 634 67.4
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.2e-237 825.9 647 65.8
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 2.2e-237 825.9 656 66.5
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 6.3e-237 824.3 648 65.7
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.4e-236 823.2 656 66.3
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 5.3e-236 821.2 656 66.0
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 7.7e-235 817.4 620 68.9
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.0e-234 817.0 739 60.6
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 2.2e-234 815.8 705 62.3
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 6.5e-234 814.3 645 65.7
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 6.5e-234 814.3 662 64.4
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.5e-233 813.1 642 65.4
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 2.1e-232 809.3 663 63.7
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.5e-225 786.6 609 67.7
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 3.2e-225 785.4 630 62.7
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 2.1e-224 782.7 687 60.7
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.1e-224 782.7 636 64.9
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 6.8e-223 777.7 666 60.8
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.1e-220 768.8 656 63.6
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 5.4e-220 768.1 646 63.6
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 2.0e-219 766.1 654 61.8
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 3.6e-216 755.4 640 61.6
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.4e-212 743.4 674 60.4
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 3.1e-212 742.3 634 61.5
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 5.2e-207 724.9 616 61.9
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 6.8e-207 724.5 544 68.2
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.6e-203 713.4 672 58.6
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 3.5e-203 712.2 763 54.0
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 7.8e-203 711.1 540 67.0
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.3e-199 699.5 668 58.5
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 4.6e-195 685.3 555 65.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.7e-189 665.6 649 56.9
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.2e-187 660.6 545 64.4
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.3e-186 656.4 659 56.0
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.6e-185 651.7 683 54.2
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.3e-185 651.4 683 54.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 4.7e-184 648.7 644 57.6
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.6e-182 642.9 522 66.3
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.4e-182 642.1 521 66.2
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 3.0e-178 629.4 482 70.1
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.2e-176 624.0 653 49.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 2.0e-174 616.7 709 53.3
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.7e-173 613.6 462 69.5
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 4.2e-172 609.0 530 63.2
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 4.6e-171 605.5 479 66.4
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.0e-171 605.1 707 50.4
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 5.1e-170 602.1 333 85.6
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.4e-167 593.2 448 67.6
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.7e-165 587.0 459 68.4
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.5e-161 573.9 485 64.5
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 4.3e-161 572.4 380 72.6
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.3e-160 570.9 453 64.7
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 4.8e-160 568.9 483 62.5
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 9.6e-153 544.7 510 59.6
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 6.2e-152 542.0 441 64.2
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.1e-151 539.7 337 77.2
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.1e-137 494.6 408 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.9e-137 493.8 647 43.3
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.2e-136 490.3 459 59.3
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.9e-135 485.3 459 59.0
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.7e-133 480.7 636 44.7
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.1e-132 478.0 538 51.9
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.8e-127 460.7 436 56.2
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 1.5e-121 441.0 629 41.5
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.1e-119 434.9 246 81.7
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.2e-102 378.3 258 73.6
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.8e-75 287.3 272 61.8
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 2.6e-73 280.8 206 68.4
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.3e-72 278.5 152 86.2
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 4.9e-72 276.6 168 75.6
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.0e-69 268.9 316 46.8
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.2e-67 261.9 584 32.9
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.0e-66 256.9 173 72.8
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 5.2e-66 256.5 168 72.6
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.2e-65 255.4 168 72.6
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 3.4e-65 253.8 168 71.4
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 1.3e-64 251.9 169 72.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 1.6e-62 245.0 182 65.4
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 9.6e-60 235.7 169 66.3
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.6e-59 235.0 168 67.3
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 2.8e-59 234.2 171 66.7
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 4.7e-59 233.4 168 64.9
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.2e-57 228.8 133 80.5
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.4e-57 227.3 326 43.6
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 2.1e-54 218.0 169 59.2
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 5.1e-53 213.4 172 62.2
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.6e-51 208.4 115 80.9
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 7.1e-47 193.0 102 84.3
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 9.3e-47 192.6 129 73.6
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.5e-46 190.7 155 65.2
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 6.0e-46 189.9 100 85.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 5.6e-44 183.3 170 55.3
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 9.0e-42 176.0 132 68.2
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 1.2e-41 175.6 132 68.2
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 1.7e-40 171.8 100 80.0
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 4.9e-40 170.2 130 63.1
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 1.6e-38 165.2 168 51.2
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.3e-36 157.1 90 80.0
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 6.2e-35 153.3 868 23.4
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 2.5e-31 141.4 114 68.4
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 5.7e-28 130.2 136 45.6
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 9.7e-28 129.4 78 82.1
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 1.5e-25 122.1 197 45.2
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.8e-24 117.5 74 78.4
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.1e-23 115.9 65 86.2
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.5e-23 114.8 173 36.4
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.6e-22 112.1 77 70.1
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 3.1e-18 97.8 69 62.3
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.3e-16 92.4 58 67.2
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 5.1e-13 80.5 56 64.3
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 3.3e-12 77.8 60 65.0
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 2.9e-08 64.7 86 43.0
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 5.0e-08 63.9 43 67.4
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 5.0e-08 63.9 86 41.9
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 6.5e-08 63.5 86 41.9
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 8.5e-08 63.2 225 22.7
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 1.1e-07 62.8 34 82.4
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 1.4e-07 62.4 57 56.1
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.9e-07 62.0 38 81.6
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 2.5e-07 61.6 129 36.4
CSS0045499 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.2e-07 60.8 38 78.9
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.2e-07 60.8 237 23.2
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 4.2e-07 60.8 219 23.3
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 7.2e-07 60.1 256 22.7
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.2e-07 60.1 38 78.9
PRCOL_00007011 Prasinoderma coloniale HOM05D004669 ORTHO05D000387 7.2e-07 60.1 186 26.3
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 7.2e-07 60.1 163 23.9
Mapoly0032s0048 Marchantia polymorpha HOM05D012385 ORTHO05D014380 9.4e-07 59.7 165 24.8
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 1.6e-06 58.9 40 72.5
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.1e-06 58.5 352 21.6
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.7e-06 58.2 352 21.6
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 2.7e-06 58.2 223 24.2
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 4.7e-06 57.4 50 40.0
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 4.7e-06 57.4 371 21.8
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 4.7e-06 57.4 221 21.7
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 8.0e-06 56.6 183 21.3


User provided reference genes

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