Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 0.0e+00 1866.3 948 100.0
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.5e-263 913.3 1004 53.1
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 2.1e-244 849.7 993 51.7
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.0e-243 845.9 984 50.1
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 6.6e-222 775.0 977 48.1
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 2.3e-219 766.5 958 47.9
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 8.9e-219 764.6 958 47.8
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 2.0e-218 763.5 988 47.8
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 2.2e-217 760.0 1007 47.4
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.4e-216 757.3 983 49.0
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 5.4e-216 755.4 983 49.1
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 9.5e-213 744.6 989 47.0
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 4.7e-212 742.3 984 47.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 7.5e-210 734.9 1021 45.8
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 8.6e-206 721.5 964 46.7
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 8.6e-206 721.5 970 46.5
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 4.0e-203 712.6 1034 44.3
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 6.6e-198 695.3 880 47.8
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 2.6e-194 683.3 1022 43.9
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 2.9e-193 679.9 1011 43.9
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 8.4e-193 678.3 996 44.8
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 3.2e-192 676.4 1011 43.8
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 3.5e-191 672.9 1003 43.7
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 1.3e-188 664.5 992 44.2
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 6.9e-187 658.7 1008 43.1
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 5.4e-184 649.0 1023 42.5
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.7e-182 644.0 1017 42.6
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.9e-181 640.6 995 43.0
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 9.6e-181 638.3 1009 41.3
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 3.6e-180 636.3 989 43.9
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 9.0e-179 631.7 987 43.0
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 2.9e-177 626.7 1017 42.8
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 4.2e-176 622.9 1035 41.2
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 2.1e-175 620.5 914 43.3
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 1.0e-174 618.2 984 42.0
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.5e-173 614.4 1074 41.2
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.6e-172 610.9 1020 42.4
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 9.0e-171 605.1 1012 40.4
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.2e-170 604.7 1016 41.8
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.0e-170 604.0 1003 41.2
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 3.8e-169 599.7 1013 41.3
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 7.1e-168 595.5 982 41.4
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.0e-166 590.1 1003 40.3
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.7e-166 589.0 1020 40.9
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.7e-166 589.0 1017 41.0
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.9e-165 587.4 1017 40.9
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 1.9e-165 587.4 1013 41.3
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.3e-164 584.7 1017 40.3
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.3e-164 584.7 993 39.9
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.4e-163 580.5 1015 40.3
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.3e-158 564.7 1012 39.0
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-157 561.6 914 41.7
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.6e-156 557.8 1063 38.6
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 2.2e-156 557.4 998 38.8
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 4.8e-156 556.2 1065 38.6
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.4e-155 554.7 989 39.4
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 5.9e-154 549.3 990 39.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 5.5e-152 542.7 984 38.9
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 5.5e-152 542.7 994 38.8
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 6.7e-150 535.8 1030 38.7
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 1.5e-149 534.6 995 38.7
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 2.0e-149 534.3 1011 38.3
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 2.2e-148 530.8 891 41.1
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 2.8e-148 530.4 1025 37.6
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 4.8e-148 529.6 1028 37.8
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.1e-147 528.5 1003 39.3
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.2e-146 525.0 1018 36.8
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 5.9e-146 522.7 1018 38.5
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 5.9e-146 522.7 1014 38.9
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 7.7e-146 522.3 981 39.3
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.5e-145 519.2 1005 39.0
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 8.5e-145 518.8 863 40.0
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 3.2e-144 516.9 989 38.1
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 7.2e-144 515.8 1001 37.6
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.2e-143 515.0 998 38.9
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.8e-142 511.1 782 44.1
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.3e-142 510.8 1012 37.5
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 6.7e-142 509.2 794 42.9
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 2.8e-140 503.8 1000 37.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 8.2e-140 502.3 985 37.9
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 1.8e-139 501.1 987 37.6
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 5.3e-139 499.6 987 37.6
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 2.6e-138 497.3 992 37.1
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 7.7e-138 495.7 1000 37.3
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 7.7e-138 495.7 1000 37.3
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.0e-137 495.4 986 37.1
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.7e-135 487.3 1018 37.0
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 6.1e-135 486.1 1030 36.8
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 1.8e-134 484.6 1030 36.2
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 4.0e-134 483.4 1006 36.8
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.9e-129 467.2 473 53.5
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.6e-127 461.5 826 39.0
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.4e-126 458.4 973 37.1
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.2e-122 445.3 987 36.0
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.8e-118 431.4 890 37.9
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.0e-118 430.3 618 43.4
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 7.5e-117 426.0 897 35.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 6.6e-105 386.3 587 42.9
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 4.7e-103 380.2 937 34.0
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 3.0e-97 360.9 962 31.8
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 6.2e-95 353.2 1018 31.1
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 4.6e-90 337.0 856 32.1
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.8e-90 336.3 956 30.8
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.5e-88 332.0 389 51.2
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.4e-85 320.9 1022 30.6
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.9e-83 315.1 657 37.6
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.7e-82 311.2 353 49.6
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 7.8e-82 309.7 581 38.2
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 7.8e-74 283.1 1010 29.1
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.5e-72 278.1 906 29.6
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 3.0e-65 254.6 955 28.8
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 4.3e-64 250.8 251 58.2
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 8.1e-63 246.5 1093 27.2
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.8e-55 220.7 313 45.4
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 6.9e-54 216.9 386 42.5
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.2e-52 211.8 249 53.0
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.1e-51 209.5 320 40.9
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.1e-51 209.5 391 38.9
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.5e-35 155.2 425 33.6
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.9e-28 131.7 371 31.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.2e-19 101.3 956 22.2
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 8.0e-18 97.1 177 39.0
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.7e-15 89.4 175 37.7
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 5.9e-13 80.9 101 52.5
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 2.2e-12 79.0 135 45.2
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 2.2e-12 79.0 88 50.0
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 8.0e-10 70.5 304 27.3
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 1.7e-07 62.8 187 36.4
Lj2P929T12 Lonicera japonica HOM05D005720 ORTHO05D006984 2.2e-07 62.4 112 40.2


User provided reference genes

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