Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 1.5e-161 572.8 296 100.0
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 7.3e-111 404.4 295 70.2
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 4.7e-110 401.7 297 70.0
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.2e-108 397.1 297 67.7
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.4e-108 395.2 295 68.8
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.7e-107 393.3 337 61.7
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.9e-107 391.7 294 68.0
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.9e-106 389.8 252 77.4
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 7.1e-106 387.9 312 66.0
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 7.1e-106 387.9 297 67.0
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 2.7e-105 386.0 307 64.8
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 2.7e-105 386.0 306 64.7
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 3.5e-105 385.6 308 65.3
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 6.0e-105 384.8 299 66.9
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 8.6e-104 380.9 297 66.0
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.3e-103 379.0 304 64.1
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.3e-103 378.6 304 64.1
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 5.6e-103 378.3 297 64.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.2e-102 377.1 300 64.7
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.6e-102 376.7 304 63.8
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.6e-102 376.7 304 63.8
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 2.8e-102 375.9 294 65.0
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 4.7e-102 375.2 299 65.6
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 8.1e-102 374.4 295 64.1
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 8.1e-102 374.4 299 63.5
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 1.1e-101 374.0 296 64.9
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.8e-101 373.2 307 62.9
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.3e-101 372.9 300 64.3
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 2.3e-101 372.9 304 64.1
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.3e-101 372.9 292 65.4
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 3.1e-101 372.5 296 64.2
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 3.1e-101 372.5 296 63.5
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 4.0e-101 372.1 296 64.5
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.5e-100 370.2 295 62.7
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.5e-100 370.2 296 62.5
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.0e-100 369.8 296 65.2
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 2.0e-100 369.8 295 62.4
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 3.4e-100 369.0 297 64.3
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 4.4e-100 368.6 311 63.0
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 9.9e-100 367.5 296 62.8
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 2.2e-99 366.3 295 63.7
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 4.9e-99 365.2 311 63.3
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 6.4e-99 364.8 296 61.5
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 3.2e-98 362.5 296 60.8
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 3.2e-98 362.5 301 61.8
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 7.1e-98 361.3 293 62.1
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 1.2e-97 360.5 307 62.2
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 1.6e-97 360.1 296 62.2
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 6.6e-96 354.8 299 62.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 2.5e-95 352.8 296 60.8
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 9.6e-95 350.9 301 61.5
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 1.2e-94 350.5 297 58.9
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 1.6e-94 350.1 312 58.7
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.1e-94 349.7 298 62.8
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 3.6e-94 349.0 298 61.4
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 8.1e-94 347.8 297 59.6
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 8.1e-94 347.8 297 59.6
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 4.4e-92 342.0 298 59.1
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.3e-91 340.5 296 60.5
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 2.2e-91 339.7 298 58.4
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 2.9e-91 339.3 301 59.1
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 5.4e-90 335.1 314 58.9
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 5.4e-90 335.1 316 57.9
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 5.4e-90 335.1 316 57.9
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 7.1e-90 334.7 316 57.0
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.2e-89 334.0 265 63.8
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 4.6e-89 332.0 316 57.6
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 4.6e-89 332.0 316 57.6
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.0e-88 330.9 317 56.2
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 1.0e-88 330.9 305 57.0
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.7e-88 330.1 316 56.6
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 2.3e-88 329.7 315 58.1
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 5.1e-88 328.6 296 57.8
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 6.6e-88 328.2 311 57.6
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 8.7e-88 327.8 308 57.8
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 1.5e-87 327.0 317 55.8
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 1.9e-87 326.6 296 59.1
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 1.6e-86 323.6 296 58.4
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 3.6e-86 322.4 305 58.7
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 6.2e-86 321.6 317 56.2
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 4.0e-85 318.9 309 56.3
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 4.5e-84 315.5 285 56.8
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 1.3e-83 313.9 313 54.3
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.9e-82 310.1 298 57.7
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 5.4e-82 308.5 300 56.7
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 2.1e-81 306.6 316 53.5
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 2.1e-81 306.6 264 56.8
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 1.5e-79 300.4 257 58.0
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 8.1e-78 294.7 304 54.3
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.8e-77 293.5 259 58.7
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 1.5e-76 290.4 296 54.7
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 1.3e-75 287.3 203 69.5
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 6.4e-75 285.0 296 55.1
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 2.4e-74 283.1 278 55.8
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.4e-74 283.1 298 52.7
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.1e-73 280.0 206 68.0
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 2.1e-73 280.0 305 50.8
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 6.0e-73 278.5 310 51.6
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.8e-69 266.9 306 50.7
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.2e-65 254.2 297 49.2
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 1.2e-65 254.2 256 54.3
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 4.6e-65 252.3 233 54.9
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.8e-53 213.8 300 43.7
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 7.7e-52 208.4 276 43.1
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 8.5e-51 204.9 311 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 3.2e-50 203.0 284 42.6
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 5.1e-48 195.7 301 42.9
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.3e-46 191.0 134 70.9
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 9.1e-45 184.9 188 52.7
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 3.4e-44 183.0 147 60.5
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.7e-43 180.6 132 71.2
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 2.2e-43 180.3 300 41.0
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 9.4e-42 174.9 301 38.5
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.7e-38 164.1 298 37.9
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.8e-38 163.3 263 39.9
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 4.1e-37 159.5 119 65.5
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 5.5e-34 149.1 126 62.7
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.0e-32 144.8 179 46.9
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 2.6e-31 140.2 140 57.1
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.8e-30 136.0 304 34.9
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.2e-28 131.3 177 44.1
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.0e-28 130.6 177 44.6
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.2e-27 127.1 120 55.8
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 4.7e-25 119.4 92 63.0
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 2.3e-24 117.1 96 56.2
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.2e-22 110.5 150 42.7
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.1e-21 108.2 124 49.2
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.8e-21 107.5 157 42.0
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 1.9e-18 97.4 100 56.0
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.0e-15 87.4 68 60.3
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 3.8e-11 73.2 97 48.5
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 2.8e-09 67.0 65 58.5
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 7.5e-07 58.9 93 37.6
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 6.4e-06 55.8 66 48.5


User provided reference genes

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