Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 2.5e-38 161.8 89 100.0
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 5.4e-17 90.9 84 69.0
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.0e-16 89.0 91 56.0
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.5e-16 88.2 95 54.7
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.5e-16 87.8 82 72.0
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.9e-16 87.4 83 71.1
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 1.3e-15 86.3 83 54.2
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 2.3e-15 85.5 54 92.6
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.3e-15 85.5 68 63.2
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.3e-15 85.5 84 66.7
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.3e-15 85.5 84 66.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.8e-15 84.7 76 60.5
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 3.3e-14 81.6 83 57.8
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.2e-14 81.3 91 56.0
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 9.5e-14 80.1 92 55.4
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.6e-13 79.3 83 59.0
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.6e-13 79.3 83 59.0
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.1e-13 79.0 70 57.1
unitig_85.g27205 Utricularia gibba HOM05D003086 ORTHO05D003347 6.1e-13 77.4 90 55.6
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 8.0e-13 77.0 78 56.4
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.8e-12 75.9 90 53.3
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 2.3e-12 75.5 61 62.3
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.3e-12 75.5 82 54.9
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 3.0e-12 75.1 60 63.3
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 4.0e-12 74.7 84 50.0
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.5e-11 72.8 91 50.5
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.5e-11 72.8 93 57.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.0e-11 72.4 55 61.8
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.0e-11 72.4 60 60.0
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.0e-11 72.4 76 51.3
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.6e-11 72.0 89 50.6
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.4e-11 71.6 93 50.5
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.4e-11 71.2 91 51.6
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.4e-11 71.2 79 51.9
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.7e-11 70.9 87 50.6
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.7e-11 70.9 77 54.5
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 7.5e-11 70.5 56 60.7
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 9.8e-11 70.1 94 58.5
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.3e-10 69.7 79 49.4
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.7e-10 69.3 91 48.4
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.7e-10 69.3 91 48.4
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.7e-10 69.3 72 56.9
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.7e-10 69.3 51 70.6
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 2.2e-10 68.9 82 52.4
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.8e-10 68.6 57 63.2
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.7e-10 68.2 87 49.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.7e-10 68.2 87 49.4
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 3.7e-10 68.2 69 52.2
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 3.7e-10 68.2 56 58.9
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.7e-10 68.2 84 46.4
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.9e-10 67.8 87 47.1
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 6.3e-10 67.4 75 50.7
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.3e-10 67.4 60 65.0
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 8.3e-10 67.0 51 64.7
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.3e-10 67.0 58 62.1
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.3e-10 67.0 52 63.5
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.4e-09 66.2 79 46.8
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.4e-09 66.2 60 60.0
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.8e-09 65.9 61 55.7
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.8e-09 65.9 53 64.2
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.8e-09 65.9 55 54.5
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-09 65.5 50 64.0
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.4e-09 65.5 70 51.4
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.1e-09 65.1 60 55.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.1e-09 65.1 51 62.7
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 3.1e-09 65.1 51 60.8
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.0e-09 63.9 75 50.7
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.2e-09 63.5 74 50.0
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 9.2e-09 63.5 51 60.8
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.2e-08 63.2 49 63.3
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.6e-08 62.8 56 57.1
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.0e-08 62.4 74 47.3
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 2.0e-08 62.4 74 47.3
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-08 62.0 75 49.3
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.5e-08 61.6 52 59.6
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.5e-08 61.6 50 62.0
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 3.5e-08 61.6 83 43.4
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.5e-08 61.6 51 54.9
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.5e-08 61.2 52 59.6
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.5e-08 61.2 53 56.6
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 4.5e-08 61.2 52 71.2
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-08 60.8 51 58.8
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-08 60.8 51 58.8
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.9e-08 60.8 51 58.8
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 5.9e-08 60.8 53 58.5
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 5.9e-08 60.8 54 55.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-07 59.7 52 57.7
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 1.3e-07 59.7 46 58.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.3e-07 59.7 53 54.7
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.7e-07 59.3 60 58.3
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.3e-07 58.9 51 52.9
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.9e-07 58.5 51 56.9
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.9e-07 58.5 71 49.3
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 3.9e-07 58.2 86 46.5
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 3.9e-07 58.2 66 53.0
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 5.0e-07 57.8 52 55.8
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.0e-07 57.8 79 46.8
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 5.0e-07 57.8 56 51.8
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 6.6e-07 57.4 64 51.6
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 8.6e-07 57.0 54 51.9
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-06 56.6 52 63.5
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.1e-06 56.6 52 63.5
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.1e-06 56.6 56 51.8
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 1.5e-06 56.2 58 62.1
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 1.9e-06 55.8 38 65.8
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 1.9e-06 55.8 38 65.8
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.9e-06 55.8 38 65.8
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 1.9e-06 55.8 38 65.8
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 1.9e-06 55.8 38 65.8
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.9e-06 55.8 38 65.8
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.9e-06 55.8 81 43.2
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.9e-06 55.8 81 43.2
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.9e-06 55.8 79 45.6
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.9e-06 55.8 79 45.6
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.9e-06 55.8 51 54.9
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.9e-06 55.8 54 53.7
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 2.5e-06 55.5 54 51.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.3e-06 55.1 71 40.8
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 3.3e-06 55.1 52 51.9
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 4.3e-06 54.7 54 61.1
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 4.3e-06 54.7 51 56.9
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 4.3e-06 54.7 51 49.0
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.3e-06 54.7 48 66.7
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 4.3e-06 54.7 62 50.0
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 5.6e-06 54.3 58 51.7
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 7.3e-06 53.9 54 51.9
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 7.3e-06 53.9 54 51.9
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 7.3e-06 53.9 38 60.5
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 7.3e-06 53.9 38 60.5
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 7.3e-06 53.9 54 51.9
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 7.3e-06 53.9 49 55.1
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 7.3e-06 53.9 59 50.8
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 7.3e-06 53.9 38 63.2
PGSC0003DMG400007045 Solanum tuberosum HOM05D003086 ORTHO05D003347 7.3e-06 53.9 61 55.7
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 9.5e-06 53.5 54 59.3
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 9.5e-06 53.5 54 59.3
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 9.5e-06 53.5 51 52.9
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 9.5e-06 53.5 52 50.0
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 9.5e-06 53.5 33 66.7
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 9.5e-06 53.5 49 55.1


User provided reference genes

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