Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 0.0e+00 1525.8 870 100.0
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 2.3e-290 1002.3 910 64.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.8e-290 1000.7 882 66.3
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.7e-278 960.7 882 63.2
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-268 930.2 881 61.9
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 8.0e-267 924.1 804 66.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.2e-265 920.2 885 61.4
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 2.3e-261 906.0 927 57.6
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 2.8e-259 899.0 893 62.9
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 3.1e-258 895.6 879 60.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 6.8e-258 894.4 894 60.5
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.1e-254 882.9 894 60.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 6.0e-254 881.3 823 64.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 8.6e-253 877.5 879 59.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 8.9e-250 867.5 866 60.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 4.9e-248 861.7 875 58.3
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 5.6e-244 848.2 909 59.0
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 2.1e-243 846.3 767 64.9
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.0e-241 839.7 880 58.2
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.2e-239 832.4 877 56.4
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.2e-239 832.0 889 58.7
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.7e-238 829.3 884 59.7
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.5e-238 828.9 891 55.6
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 6.0e-238 828.2 882 57.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.3e-237 827.0 859 60.4
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 5.1e-237 825.1 881 58.1
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 5.1e-237 825.1 883 58.7
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.3e-236 822.0 828 59.9
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 8.1e-235 817.8 881 58.7
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.1e-234 815.8 879 55.3
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.1e-231 804.7 884 56.3
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 9.3e-231 804.3 886 57.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 6.0e-230 801.6 766 62.7
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.8e-229 800.0 880 56.6
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-229 800.0 884 54.2
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.8e-227 792.7 882 59.0
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 3.7e-227 792.3 882 54.6
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 4.8e-227 792.0 843 57.3
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.8e-227 792.0 877 57.0
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 8.4e-224 781.2 876 56.4
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.9e-223 780.0 875 56.8
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.2e-223 779.2 877 56.4
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 5.5e-223 778.5 905 55.2
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.7e-222 776.2 881 56.4
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.5e-220 770.4 887 55.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.9e-220 770.0 880 54.8
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.3e-220 769.2 874 56.2
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 7.4e-220 768.1 879 53.5
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 7.4e-220 768.1 857 55.7
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.6e-219 766.9 879 56.1
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.1e-219 766.5 888 56.1
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 6.2e-219 765.0 879 53.4
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.4e-218 763.8 867 56.2
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.6e-217 759.6 769 59.3
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.4e-215 753.8 881 54.1
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.2e-215 752.7 893 55.0
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 4.2e-215 752.3 874 54.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 7.1e-215 751.5 847 55.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 7.1e-215 751.5 877 55.1
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 7.1e-215 751.5 792 57.2
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.2e-214 750.7 883 54.6
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 7.9e-214 748.0 847 54.8
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.3e-213 747.3 880 55.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.5e-212 743.0 959 49.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.3e-212 742.7 868 56.1
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.3e-212 742.3 856 54.6
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.4e-212 741.5 869 55.5
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.7e-212 741.1 883 54.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 6.3e-211 738.4 880 51.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.8e-210 736.9 822 55.4
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.2e-209 734.2 888 55.1
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.0e-208 731.1 881 54.4
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.7e-208 730.3 856 55.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.4e-207 727.2 887 54.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.2e-207 725.7 884 53.6
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 5.5e-207 725.3 831 55.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 2.1e-206 723.4 723 58.9
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.0e-205 721.1 858 54.5
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 6.7e-205 718.4 806 56.3
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 9.1e-202 708.0 899 48.9
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 7.7e-201 704.9 837 55.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.4e-199 700.7 800 55.9
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.9e-199 700.3 875 55.0
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.2e-195 686.8 858 53.0
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.5e-193 680.6 889 49.2
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.2e-192 676.8 882 52.7
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.5e-192 674.9 881 52.2
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 8.5e-192 674.9 881 52.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-190 671.0 881 52.0
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 5.2e-189 665.6 798 54.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 4.5e-185 652.5 833 52.6
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.7e-184 650.6 614 59.8
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.5e-183 647.5 878 50.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.2e-183 646.0 881 48.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.8e-181 640.6 882 48.9
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.2e-180 637.9 883 50.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.8e-178 630.6 818 49.8
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 2.7e-174 616.7 874 47.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.5e-172 610.9 807 50.8
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.6e-172 610.1 881 47.0
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.2e-171 607.1 764 50.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 5.9e-169 599.0 898 45.9
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.9e-168 596.7 690 53.0
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-166 591.3 875 45.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.1e-166 590.5 661 55.7
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-165 587.8 876 45.9
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.3e-165 587.0 874 46.1
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.9e-159 567.4 764 48.7
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.1e-158 563.9 764 48.7
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.2e-156 558.1 753 48.3
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.2e-156 558.1 909 44.9
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.4e-156 556.6 726 55.2
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 7.5e-140 502.3 873 43.8
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.9e-139 500.4 745 48.7
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.4e-138 496.1 742 48.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 6.6e-136 489.2 746 48.7
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.9e-135 487.6 747 48.9
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 9.5e-135 485.3 752 50.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.0e-132 477.6 851 39.6
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 3.4e-132 476.9 903 40.2
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 3.8e-131 473.4 742 47.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.4e-131 472.2 852 40.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.5e-127 461.5 873 40.2
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.1e-125 455.3 875 40.2
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 2.4e-125 454.1 744 46.8
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.0e-120 437.2 745 45.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 5.6e-119 433.0 729 44.2
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.2e-118 429.5 731 44.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.7e-115 421.4 746 45.8
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 7.4e-111 406.0 729 42.7
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 9.6e-111 405.6 731 42.7
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 8.1e-110 402.5 721 43.3
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 8.4e-99 365.9 740 41.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-97 361.7 518 46.9
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.1e-95 355.5 411 53.5
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-87 328.9 274 65.7
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-87 328.9 274 65.7
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.8e-80 305.1 979 31.7
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-79 302.4 738 36.4
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-74 285.8 656 36.9
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 7.2e-74 283.1 372 50.3
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.7e-70 271.9 933 32.3
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.8e-69 268.5 728 34.8
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.0e-63 248.4 682 31.7
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.1e-61 241.1 865 30.5
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-56 226.1 288 49.7
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.3e-51 208.4 304 45.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 6.8e-48 196.8 422 37.7
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.4e-39 167.9 214 49.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 4.4e-39 167.5 166 54.8
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.0e-35 156.4 95 87.4
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-34 152.9 124 62.9
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.1e-34 152.9 124 62.9
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 4.3e-34 151.0 157 60.5
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 3.7e-30 137.9 173 49.1
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 7.8e-28 130.2 119 58.8
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 1.6e-25 122.5 204 39.7
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.0e-24 117.9 171 43.9
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.0e-23 115.5 134 55.2
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 5.8e-23 114.0 197 41.1
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 3.0e-19 101.7 127 47.2
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 5.1e-19 100.9 125 47.2
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 1.2e-17 96.3 78 65.4
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 2.4e-16 92.0 180 38.3
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 2.1e-12 79.0 121 43.8
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 2.7e-12 78.6 214 32.2
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-12 78.6 118 41.5
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 4.6e-12 77.8 87 48.3
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 4.6e-12 77.8 87 48.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.5e-10 72.0 45 77.8
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 4.3e-10 71.2 85 51.8
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 5.6e-10 70.9 137 43.1
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 9.6e-10 70.1 198 33.8
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.3e-09 69.7 61 60.7
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 1.6e-09 69.3 94 41.5
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 2.1e-09 68.9 34 94.1
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 6.2e-09 67.4 475 27.4
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 1.8e-08 65.9 42 78.6
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.1e-08 65.1 96 44.8
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 5.3e-08 64.3 409 28.4
CAN.G125.22 Capsicum annuum HOM05D001472 ORTHO05D004439 9.0e-08 63.5 95 40.0
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 9.0e-08 63.5 71 50.7
CAN.G578.12 Capsicum annuum HOM05D001816 ORTHO05D004439 4.4e-07 61.2 59 55.9


User provided reference genes

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