Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 3.6e-178 628.2 339 100.0
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 2.3e-44 183.7 360 38.3
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 7.4e-43 178.7 361 38.5
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 2.4e-41 173.7 361 38.0
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 1.2e-40 171.4 377 38.7
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 2.6e-40 170.2 370 38.1
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 5.9e-40 169.1 352 38.1
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 6.5e-39 165.6 321 38.6
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.2e-38 163.3 346 39.6
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 9.4e-38 161.8 346 39.6
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.2e-37 161.4 316 38.3
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.4e-36 157.9 351 36.5
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 1.2e-35 154.8 317 39.4
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 8.3e-34 148.7 315 38.1
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 2.4e-33 147.1 357 34.7
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 4.1e-33 146.4 364 36.8
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 5.3e-33 146.0 354 35.9
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.2e-32 144.8 323 38.1
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 2.0e-32 144.1 374 32.4
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 2.0e-32 144.1 373 34.9
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 2.7e-32 143.7 428 33.2
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 5.0e-31 139.4 371 35.0
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 2.5e-30 137.1 341 34.9
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 3.2e-30 136.7 317 36.9
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 5.5e-30 136.0 364 36.3
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 9.4e-30 135.2 342 34.5
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 9.4e-30 135.2 386 31.9
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.2e-29 134.8 366 34.2
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 6.8e-28 129.0 387 32.3
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.5e-27 127.9 341 36.1
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.5e-27 127.9 272 38.2
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.0e-27 127.5 344 34.0
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 5.7e-27 125.9 277 36.1
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 9.8e-27 125.2 417 31.4
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.2e-26 124.0 363 34.2
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 2.8e-26 123.6 334 31.4
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 4.1e-25 119.8 383 29.2
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 2.7e-24 117.1 359 31.8
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 4.5e-24 116.3 337 31.5
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 5.9e-24 115.9 235 35.7
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.3e-23 114.8 384 31.8
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.3e-23 114.8 235 35.3
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.7e-23 114.4 268 33.6
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.7e-23 114.4 268 33.6
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.7e-23 114.4 268 33.6
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 5.0e-23 112.8 226 35.8
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 6.6e-23 112.5 372 29.6
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 6.6e-23 112.5 330 31.8
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.9e-22 110.9 249 36.9
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 3.3e-22 110.2 222 36.5
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 3.3e-22 110.2 280 32.5
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 3.3e-22 110.2 289 32.9
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 7.2e-22 109.0 297 36.0
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.2e-21 108.2 226 36.3
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.2e-21 108.2 348 31.6
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.6e-21 107.8 351 30.2
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.1e-21 107.5 280 35.4
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 2.8e-21 107.1 314 32.8
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 8.0e-21 105.5 237 35.0
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.0e-20 105.1 346 30.9
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 1.4e-20 104.8 234 34.6
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.8e-20 104.4 346 30.6
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 1.8e-20 104.4 289 34.3
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 2.3e-20 104.0 229 35.4
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 3.0e-20 103.6 209 36.4
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 3.0e-20 103.6 245 34.7
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 4.0e-20 103.2 216 38.0
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 8.9e-20 102.1 346 29.8
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 8.9e-20 102.1 268 34.7
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 1.2e-19 101.7 216 37.0
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 2.0e-19 100.9 310 32.6
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 2.6e-19 100.5 218 37.2
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 9.8e-19 98.6 377 30.2
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 1.3e-18 98.2 207 35.3
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 1.7e-18 97.8 239 33.9
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 3.7e-18 96.7 241 34.4
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.9e-18 96.3 204 40.7
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 6.3e-18 95.9 194 39.7
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 6.3e-18 95.9 203 38.9
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 8.3e-18 95.5 236 31.8
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.4e-17 94.7 339 29.2
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.8e-17 94.4 179 38.0
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 3.2e-17 93.6 228 33.3
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 4.1e-17 93.2 230 35.2
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 9.2e-17 92.0 241 34.0
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.2e-16 91.7 334 30.5
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 1.2e-16 91.7 234 32.5
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 1.2e-16 91.7 218 33.9
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.6e-16 91.3 250 32.0
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 2.0e-16 90.9 216 37.5
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.7e-16 90.5 357 29.4
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 4.5e-16 89.7 279 30.1
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 4.5e-16 89.7 157 41.4
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 5.9e-16 89.4 328 32.9
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 2.3e-15 87.4 216 32.4
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 3.9e-15 86.7 238 31.5
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 5.0e-15 86.3 210 35.7
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 6.6e-15 85.9 331 26.9
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 8.6e-15 85.5 218 33.0
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 8.6e-15 85.5 208 36.1
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 2.1e-13 80.9 231 31.2
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.0e-12 78.6 167 36.5
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.8e-12 77.8 235 29.8
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 5.2e-12 76.3 273 31.5
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 6.8e-12 75.9 229 31.0
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 1.4e-09 68.2 211 30.3
ECA233G0397 Erigeron canadensis HOM05D003457 ORTHO05D009249 2.0e-08 64.3 204 28.4
SEGI_37736 Sequoiadendron giganteum HOM05D013917 ORTHO05D013169 7.8e-08 62.4 245 27.3
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 8.6e-07 58.9 183 30.1
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 2.5e-06 57.4 317 27.1


User provided reference genes

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