Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 2.1e-166 589.0 297 100.0
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 9.8e-124 447.2 237 95.8
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 2.9e-107 392.5 298 69.8
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 6.4e-107 391.3 292 70.2
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.1e-106 390.6 299 69.2
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.6e-105 385.2 297 69.7
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.8e-105 384.4 297 70.0
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 4.3e-103 378.6 302 66.9
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 6.9e-101 371.3 281 68.0
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 3.4e-100 369.0 292 67.5
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 2.4e-98 362.8 272 71.0
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 7.8e-97 357.8 292 65.1
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 6.4e-91 338.2 301 65.8
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 2.4e-90 336.3 294 61.6
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.2e-89 334.0 299 61.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.7e-89 332.8 293 62.8
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 4.6e-89 332.0 223 74.4
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.0e-88 330.9 305 63.0
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 2.3e-88 329.7 301 61.8
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 5.1e-88 328.6 221 73.8
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 6.7e-88 328.2 281 63.7
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 2.1e-86 323.2 270 64.4
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.1e-86 323.2 280 64.3
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 2.4e-85 319.7 270 63.7
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 5.3e-85 318.5 289 59.5
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 5.3e-85 318.5 298 57.0
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 9.0e-85 317.8 295 60.0
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 9.0e-85 317.8 295 58.3
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.2e-84 317.4 226 69.5
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 4.5e-84 315.5 263 65.0
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 4.5e-84 315.5 292 59.9
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 9.9e-84 314.3 290 60.0
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.3e-83 313.9 290 58.6
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.3e-83 313.9 324 55.2
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.7e-83 313.5 311 57.2
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.7e-83 313.5 269 62.5
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 2.9e-83 312.8 289 61.2
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 3.8e-83 312.4 293 59.7
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 6.4e-83 311.6 270 61.5
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 8.4e-83 311.2 226 69.9
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.4e-82 310.5 243 65.8
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.4e-82 310.5 277 59.6
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 4.2e-82 308.9 270 63.0
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 4.2e-82 308.9 304 57.2
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 9.3e-82 307.8 268 63.4
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.1e-81 306.6 301 59.1
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.5e-81 305.8 292 59.6
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 4.6e-81 305.4 269 60.6
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.6e-81 305.4 292 59.9
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 7.9e-81 304.7 300 57.7
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.3e-80 303.9 211 71.1
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 1.3e-80 303.9 261 62.1
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.8e-80 303.5 306 56.5
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.8e-80 303.5 223 69.1
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 2.3e-80 303.1 290 57.6
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.0e-80 302.8 265 60.8
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.9e-80 302.4 284 60.9
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 6.7e-80 301.6 264 60.2
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 6.7e-80 301.6 269 60.6
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 8.7e-80 301.2 286 58.4
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.9e-79 300.1 290 57.9
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 2.5e-79 299.7 295 59.3
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 3.3e-79 299.3 265 62.3
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 4.3e-79 298.9 222 69.8
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 9.6e-79 297.7 268 60.8
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 1.3e-78 297.4 212 68.9
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.3e-78 297.4 280 59.3
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 2.8e-78 296.2 293 58.0
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.8e-78 295.4 263 62.0
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 6.2e-78 295.0 302 56.0
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.2e-78 294.7 289 59.5
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.1e-77 294.3 268 60.8
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 1.4e-77 293.9 290 57.2
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.1e-77 292.7 265 60.8
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 4.0e-77 292.4 271 58.7
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 4.0e-77 292.4 292 57.5
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 5.3e-77 292.0 299 57.5
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 9.0e-77 291.2 296 56.1
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.5e-76 290.4 286 57.0
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 4.5e-76 288.9 220 69.5
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 4.5e-76 288.9 296 54.7
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 5.8e-76 288.5 296 55.1
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.0e-75 287.7 291 55.7
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.7e-75 287.0 295 56.3
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 2.2e-75 286.6 304 53.3
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 4.9e-75 285.4 297 54.2
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.9e-74 283.5 297 54.2
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 3.2e-74 282.7 211 66.8
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 5.5e-74 282.0 297 54.2
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 7.1e-74 281.6 209 64.1
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 7.9e-73 278.1 295 53.9
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 3.0e-72 276.2 267 58.1
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.9e-72 275.8 211 67.3
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.9e-72 275.8 276 55.8
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 6.7e-72 275.0 296 53.0
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 6.7e-72 275.0 296 53.0
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.5e-71 273.9 280 56.1
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 4.3e-71 272.3 296 52.7
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 6.3e-70 268.5 210 65.7
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.8e-69 266.9 266 55.6
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 7.7e-68 261.5 244 59.0
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.7e-67 260.4 212 64.2
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 5.0e-67 258.8 206 63.6
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 5.0e-67 258.8 206 63.6
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.1e-66 257.7 231 59.7
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.1e-66 257.7 231 59.7
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 7.2e-66 255.0 198 61.6
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 9.4e-66 254.6 197 61.9
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.6e-65 253.8 201 63.2
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 3.9e-64 249.2 215 62.8
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.0e-51 208.0 210 55.7
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.0e-51 208.0 213 53.1
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.4e-50 204.1 213 53.1
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 9.1e-45 184.9 248 41.5
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 7.7e-44 181.8 164 57.3
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 8.0e-41 171.8 219 49.8
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 5.7e-39 165.6 225 47.1
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.7e-38 164.1 172 54.7
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.1e-37 159.8 214 44.4
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 2.7e-36 156.8 210 43.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 3.5e-36 156.4 214 42.5
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 2.5e-34 150.2 173 47.4
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 3.0e-32 143.3 192 48.4
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 3.4e-31 139.8 173 46.8
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 1.1e-26 124.8 117 56.4
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.1e-25 120.6 107 61.7
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 6.3e-22 109.0 146 43.2
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 8.3e-22 108.6 78 66.7
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 1.1e-18 98.2 68 63.2
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 4.0e-16 89.7 60 63.3
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 1.7e-14 84.3 226 34.5
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 2.2e-14 84.0 145 37.2
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.1e-13 81.6 88 45.5
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 7.3e-10 68.9 76 47.4


User provided reference genes

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