Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.0e-90 336.7 166 100.0
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 1.4e-87 326.2 166 96.4
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 4.1e-63 245.0 158 76.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.1e-63 245.0 147 80.3
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 7.1e-63 244.2 154 80.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 7.1e-63 244.2 167 72.5
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 7.1e-63 244.2 166 72.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.6e-62 241.5 147 79.6
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.6e-62 241.5 147 79.6
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 6.0e-62 241.1 164 73.8
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.8e-62 240.7 166 70.5
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 3.9e-61 238.4 151 76.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.1e-61 238.0 159 74.8
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 5.1e-61 238.0 148 77.0
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.1e-61 238.0 165 72.1
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 5.1e-61 238.0 166 71.1
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 5.1e-61 238.0 166 71.1
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 6.6e-61 237.7 155 74.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 6.6e-61 237.7 172 69.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.1e-60 236.9 154 77.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.1e-60 236.9 165 70.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.5e-60 236.5 158 74.1
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.5e-60 235.7 165 70.3
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 3.3e-60 235.3 147 77.6
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.3e-60 235.3 154 76.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.3e-60 235.0 148 78.4
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.6e-60 234.6 158 74.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 5.6e-60 234.6 156 73.7
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 7.3e-60 234.2 152 75.7
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 9.6e-60 233.8 149 78.5
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 9.6e-60 233.8 154 75.3
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 9.6e-60 233.8 154 76.0
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 9.6e-60 233.8 146 76.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.6e-59 233.0 154 75.3
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.1e-59 232.6 149 75.2
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.8e-59 232.3 154 74.0
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.8e-59 232.3 155 74.2
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.7e-59 231.5 147 76.9
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 4.7e-59 231.5 161 69.6
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 4.7e-59 231.5 156 70.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 6.2e-59 231.1 154 74.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 8.1e-59 230.7 153 74.5
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-58 230.3 148 77.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.1e-58 230.3 164 71.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.1e-58 230.3 155 73.5
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.8e-58 229.6 147 75.5
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.4e-58 229.2 152 73.7
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.1e-58 228.8 155 73.5
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 3.1e-58 228.8 152 73.0
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 4.0e-58 228.4 149 76.5
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.0e-58 228.4 148 76.4
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.2e-58 228.0 154 74.0
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 6.8e-58 227.6 148 74.3
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.9e-58 227.3 148 76.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.2e-57 226.9 149 74.5
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.5e-57 226.5 148 75.7
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.5e-57 226.5 160 71.9
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.4e-57 225.3 157 72.0
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.4e-57 224.9 168 68.5
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 5.8e-57 224.6 151 74.2
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 5.8e-57 224.6 151 74.2
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.8e-57 224.6 151 74.2
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.8e-57 224.6 151 74.2
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 7.6e-57 224.2 152 72.4
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 7.6e-57 224.2 152 72.4
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 7.6e-57 224.2 157 71.3
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 7.6e-57 224.2 149 73.8
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-57 224.2 151 74.2
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-57 224.2 151 74.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.6e-57 224.2 151 74.2
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.3e-56 223.4 149 71.8
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-56 223.4 160 71.9
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.3e-56 223.4 165 68.5
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.3e-56 223.4 149 75.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.7e-56 223.0 152 71.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.2e-56 222.6 158 69.0
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.9e-56 222.2 165 67.9
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.9e-56 222.2 165 68.5
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.9e-56 222.2 154 71.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 3.8e-56 221.9 152 73.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.8e-56 221.9 168 66.7
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 6.4e-56 221.1 165 70.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 6.4e-56 221.1 161 69.6
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 8.4e-56 220.7 152 69.7
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.4e-56 220.7 152 69.1
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 8.4e-56 220.7 148 72.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-55 220.3 156 69.9
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-55 220.3 156 69.2
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.1e-55 220.3 148 73.0
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.4e-55 219.9 150 75.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.9e-55 219.5 165 69.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.9e-55 219.5 151 72.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.2e-55 218.4 156 69.2
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 5.4e-55 218.0 148 72.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 5.4e-55 218.0 168 66.1
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 5.4e-55 218.0 153 71.2
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 9.3e-55 217.2 148 73.0
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 9.3e-55 217.2 146 73.3
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.2e-54 216.9 149 70.5
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.6e-54 216.5 156 68.6
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.6e-54 216.5 148 73.6
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.6e-54 216.5 157 70.1
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.1e-54 216.1 149 73.2
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.7e-54 215.7 159 71.7
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.7e-54 215.7 148 73.6
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.6e-54 214.9 159 67.9
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.6e-54 214.9 153 70.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 4.6e-54 214.9 149 70.5
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 6.0e-54 214.5 153 70.6
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.0e-53 213.8 159 67.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.0e-53 213.8 149 70.5
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.3e-53 213.4 161 66.5
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.7e-53 213.0 167 64.1
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.3e-53 212.6 148 70.9
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.3e-53 212.6 172 62.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.9e-53 211.8 153 67.3
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.9e-53 211.8 146 71.2
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 5.1e-53 211.5 139 76.3
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 5.1e-53 211.5 131 77.1
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 8.7e-53 210.7 137 77.4
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.5e-52 209.9 155 66.5
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.5e-52 209.9 165 64.2
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.5e-52 209.1 148 70.9
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.6e-52 208.0 151 69.5
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 5.6e-52 208.0 188 60.6
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 7.3e-52 207.6 151 68.9
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.3e-51 206.8 148 69.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.6e-51 206.5 151 69.5
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.6e-51 206.5 165 64.2
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-50 203.8 165 64.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.4e-50 202.6 148 69.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.0e-50 201.8 151 64.2
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 4.0e-50 201.8 152 66.4
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.4e-49 198.7 164 64.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.4e-49 198.7 165 63.0
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 5.8e-49 198.0 149 69.1
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 2.9e-48 195.7 151 65.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.4e-48 194.1 164 61.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-46 189.9 147 59.9
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.7e-46 189.1 147 61.2
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 6.0e-46 188.0 130 71.5
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.1e-42 177.2 153 62.7
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.2e-41 173.7 111 79.3
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-39 167.2 164 56.1
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.1e-39 167.2 140 58.6
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.2e-39 165.2 113 70.8
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.9e-38 161.0 124 66.1
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.9e-38 161.0 165 55.2
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 4.0e-34 148.7 93 73.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.5e-33 146.7 141 51.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 2.9e-32 142.5 92 76.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.4e-31 140.2 93 74.2
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.2e-31 139.0 93 78.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 3.2e-31 139.0 158 48.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 4.3e-28 128.6 93 74.2
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.3e-27 127.1 75 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 6.2e-27 124.8 155 41.3
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.1e-26 122.5 92 64.1
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 3.4e-25 119.0 76 69.7
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.0e-24 117.5 150 40.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.4e-15 87.0 59 62.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.6e-06 55.8 41 61.0
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 7.9e-06 54.7 41 58.5


User provided reference genes

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