Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 3.2e-62 241.5 116 100.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 8.5e-47 190.3 146 64.4
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 8.5e-47 190.3 146 66.4
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 8.5e-47 190.3 146 66.4
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.2e-46 188.3 146 65.8
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 3.2e-46 188.3 146 65.8
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.2e-45 186.4 146 64.4
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.2e-45 186.4 146 64.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.2e-45 186.4 146 65.1
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.6e-45 186.0 146 65.8
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.7e-45 185.3 146 63.7
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.6e-45 184.9 146 63.7
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 6.1e-45 184.1 146 65.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 7.9e-45 183.7 146 62.3
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.0e-44 183.3 150 65.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.0e-44 183.3 146 63.0
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-44 183.0 146 65.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.4e-44 183.0 146 63.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.3e-44 182.2 146 63.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.0e-44 181.8 146 61.0
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 3.9e-44 181.4 146 62.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 6.7e-44 180.6 146 62.3
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 6.7e-44 180.6 146 63.7
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.0e-43 179.1 151 64.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.7e-43 177.6 148 61.5
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 9.7e-43 176.8 146 59.6
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.3e-42 176.4 146 62.3
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.7e-42 176.0 147 61.2
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.7e-42 176.0 146 61.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.2e-42 175.6 137 65.7
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 3.7e-42 174.9 146 63.0
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 3.7e-42 174.9 146 63.0
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 4.8e-42 174.5 146 61.0
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 6.3e-42 174.1 147 60.5
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.4e-41 172.9 147 61.9
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.4e-41 172.9 146 63.0
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.8e-41 172.6 146 58.9
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.4e-41 172.2 146 61.6
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.4e-41 172.2 143 59.4
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 4.1e-41 171.4 147 61.2
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 4.1e-41 171.4 148 62.8
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 4.1e-41 171.4 147 59.9
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 6.9e-41 170.6 146 60.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 9.1e-41 170.2 147 61.2
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.1e-41 170.2 147 57.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.1e-41 170.2 147 57.8
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 9.1e-41 170.2 147 59.9
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 9.1e-41 170.2 147 59.9
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.0e-40 169.1 147 58.5
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 2.0e-40 169.1 148 59.5
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 5.9e-40 167.5 146 58.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 7.7e-40 167.2 146 58.2
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 7.7e-40 167.2 146 58.9
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.0e-39 166.8 147 59.2
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.3e-39 166.4 146 58.2
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.7e-39 166.0 146 57.5
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-39 165.2 146 56.8
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.8e-39 164.9 146 58.9
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 5.0e-39 164.5 140 60.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 6.5e-39 164.1 146 56.8
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 8.5e-39 163.7 150 60.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.4e-38 162.9 146 56.8
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 1.4e-38 162.9 146 59.6
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.9e-38 162.5 146 55.5
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-38 162.5 147 57.1
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-38 162.5 147 58.5
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 3.2e-38 161.8 146 56.2
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 4.2e-38 161.4 144 57.6
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 4.2e-38 161.4 148 58.8
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.5e-38 161.0 148 58.1
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.2e-38 160.6 146 54.8
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.2e-38 160.6 146 54.8
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.2e-38 160.6 148 58.8
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 7.2e-38 160.6 146 56.2
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 9.4e-38 160.2 146 55.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.2e-37 159.8 146 53.4
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.6e-37 159.5 148 57.4
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.6e-37 159.5 146 57.5
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.1e-37 159.1 146 54.8
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.1e-37 159.1 146 54.8
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.1e-37 159.1 146 54.8
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 4.7e-37 157.9 148 57.4
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.1e-37 157.5 147 55.8
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 7.9e-37 157.1 146 54.8
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 7.9e-37 157.1 147 54.4
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.8e-36 156.0 146 54.1
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.8e-36 156.0 144 55.6
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-36 155.2 146 54.1
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.0e-36 155.2 147 55.1
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 3.9e-36 154.8 148 56.8
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 3.9e-36 154.8 146 54.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.1e-35 153.3 149 56.4
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-35 153.3 147 56.5
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.5e-35 152.9 146 51.4
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.0e-35 152.5 146 55.5
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.6e-35 152.1 149 55.7
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.3e-35 151.8 146 51.4
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 3.3e-35 151.8 146 53.4
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.3e-35 151.8 146 50.0
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.4e-35 151.4 146 50.0
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.7e-35 151.0 130 60.0
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 2.8e-34 148.7 146 52.7
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.3e-34 147.5 148 54.7
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 6.3e-34 147.5 150 58.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.1e-33 146.7 146 54.8
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-33 146.7 140 52.9
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.1e-33 146.7 132 56.8
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.1e-33 146.7 132 56.8
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.4e-33 146.4 149 53.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.4e-33 146.4 132 56.8
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.8e-33 146.0 133 58.6
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.1e-33 145.2 147 53.7
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.5e-32 142.9 146 48.6
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-32 142.9 147 53.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.5e-32 142.9 147 53.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 2.0e-32 142.5 147 53.7
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 2.0e-32 142.5 147 53.7
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.6e-32 142.1 150 54.0
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.5e-32 141.4 147 54.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.9e-32 141.0 122 58.2
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 7.7e-32 140.6 150 51.3
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.0e-31 140.2 121 62.8
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-31 139.8 117 60.7
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-31 139.0 131 52.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.2e-31 139.0 125 56.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 3.8e-31 138.3 147 53.1
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 6.5e-31 137.5 150 52.7
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 8.5e-31 137.1 146 50.0
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.9e-30 136.0 150 51.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.9e-30 136.0 150 51.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.9e-30 136.0 150 51.3
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 7.2e-30 134.0 150 49.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 7.2e-30 134.0 150 49.3
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-29 133.3 150 50.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-29 132.5 150 52.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.7e-29 132.1 150 50.7
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 3.6e-29 131.7 146 48.6
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.7e-29 131.3 146 49.3
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-28 129.8 148 50.0
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.4e-28 129.8 148 50.0
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.4e-28 129.8 148 50.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 5.2e-28 127.9 151 47.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.7e-26 122.9 96 65.6
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 8.2e-26 120.6 68 85.3
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 7.0e-25 117.5 123 49.6
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.3e-23 113.2 93 64.5
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 6.5e-23 110.9 75 77.3
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 6.5e-23 110.9 134 49.3
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.1e-22 110.2 106 55.7
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 6.1e-21 104.4 91 59.3
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.7e-18 95.1 134 47.0
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.6e-16 89.7 148 39.9
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.2e-11 73.6 135 37.8
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 2.8e-10 68.9 37 75.7
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 6.6e-07 57.8 33 81.8


User provided reference genes

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