Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 9.0e-55 216.9 123 100.0
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.6e-27 126.3 117 61.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.3e-25 118.6 108 63.0
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 5.7e-25 117.9 114 60.5
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.8e-24 115.5 119 59.7
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 4.8e-24 114.8 111 58.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 4.8e-24 114.8 114 61.4
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.8e-23 112.8 91 72.5
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.8e-23 112.8 89 70.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 2.4e-23 112.5 108 63.9
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.1e-23 111.7 91 65.9
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.1e-23 111.7 117 60.7
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 6.9e-23 110.9 105 64.8
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.0e-23 110.5 113 60.2
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.5e-22 109.8 99 62.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.5e-22 109.8 99 62.6
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.6e-22 109.0 112 58.9
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.5e-22 108.2 112 58.9
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 5.9e-22 107.8 113 59.3
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.9e-22 107.8 114 57.9
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.6e-22 107.5 114 57.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.0e-21 107.1 91 67.0
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.7e-21 106.3 99 60.6
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.2e-21 105.9 112 58.9
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.8e-21 105.1 105 63.8
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 5.0e-21 104.8 112 58.9
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.5e-21 104.0 114 57.0
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.9e-20 102.8 110 55.5
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.2e-20 102.1 114 58.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 4.2e-20 101.7 115 58.3
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 7.2e-20 100.9 89 61.8
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 7.2e-20 100.9 110 55.5
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.2e-19 100.1 97 62.9
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.6e-19 99.8 106 60.4
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 3.6e-19 98.6 86 65.1
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 3.6e-19 98.6 111 54.1
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 3.6e-19 98.6 82 70.7
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.6e-19 98.2 117 57.3
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.1e-19 97.8 110 57.3
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.1e-19 97.8 111 55.9
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.1e-19 97.8 119 56.3
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 7.9e-19 97.4 91 62.6
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.0e-18 97.1 112 55.4
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.0e-18 97.1 115 53.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.4e-18 96.7 108 56.5
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-18 96.7 79 69.6
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.4e-18 96.7 99 58.6
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.4e-18 96.7 89 59.6
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.4e-18 96.7 89 59.6
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 2.3e-18 95.9 81 67.9
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 2.3e-18 95.9 81 67.9
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.3e-18 95.9 82 69.5
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.0e-18 95.5 106 56.6
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.0e-18 95.5 109 53.2
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.0e-18 95.5 115 53.0
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 5.1e-18 94.7 87 63.2
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.7e-18 94.4 117 52.1
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.7e-18 94.4 79 68.4
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 6.7e-18 94.4 87 65.5
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.8e-18 94.0 109 56.0
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 2.5e-17 92.4 83 65.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.5e-17 92.4 92 60.9
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 2.5e-17 92.4 110 54.5
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 2.5e-17 92.4 66 74.2
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.3e-17 92.0 87 63.2
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.3e-17 92.0 106 58.5
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 4.3e-17 91.7 89 61.8
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.3e-17 91.7 72 69.4
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 5.7e-17 91.3 86 62.8
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 7.4e-17 90.9 89 60.7
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 7.4e-17 90.9 114 53.5
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 9.7e-17 90.5 92 59.8
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.3e-16 90.1 119 49.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.7e-16 89.7 88 60.2
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.7e-16 89.7 83 66.3
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.2e-16 89.4 94 58.5
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.8e-16 89.0 114 50.9
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 3.7e-16 88.6 116 50.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 3.7e-16 88.6 86 61.6
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 3.7e-16 88.6 86 60.5
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 3.7e-16 88.6 87 57.5
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 4.8e-16 88.2 85 65.9
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 6.3e-16 87.8 90 60.0
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 8.2e-16 87.4 94 55.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 8.2e-16 87.4 82 65.9
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 1.1e-15 87.0 65 76.9
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.4e-15 86.7 104 58.7
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.4e-15 86.7 82 63.4
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.8e-15 86.3 79 64.6
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.1e-15 85.5 91 56.0
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.1e-15 85.5 106 55.7
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 4.1e-15 85.1 79 62.0
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 4.1e-15 85.1 84 56.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 6.9e-15 84.3 85 60.0
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 9.1e-15 84.0 79 62.0
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.2e-14 83.6 101 56.4
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.5e-14 83.2 59 74.6
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.5e-14 83.2 84 59.5
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.0e-14 82.8 70 61.4
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 2.0e-14 82.8 98 53.1
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.6e-14 82.4 88 55.7
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 3.4e-14 82.0 101 55.4
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 4.5e-14 81.6 84 59.5
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.5e-14 81.6 106 50.9
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 5.9e-14 81.3 74 59.5
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 7.7e-14 80.9 75 64.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 7.7e-14 80.9 90 60.0
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.0e-13 80.5 85 55.3
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.3e-13 80.1 78 59.0
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.3e-13 80.1 113 50.4
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.7e-13 79.7 119 49.6
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 2.9e-13 79.0 89 55.1
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 6.5e-13 77.8 82 57.3
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 8.5e-13 77.4 106 50.9
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.1e-12 77.0 54 74.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.1e-12 77.0 87 57.5
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 1.4e-12 76.6 117 47.0
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.4e-12 76.6 92 51.1
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 1.9e-12 76.3 78 59.0
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.5e-12 75.9 106 50.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 3.2e-12 75.5 79 63.3
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 4.2e-12 75.1 83 57.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 7.2e-12 74.3 106 49.1
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.6e-11 73.2 106 49.1
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.6e-11 73.2 106 49.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 4.7e-11 71.6 77 54.5
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.8e-10 69.7 116 44.0
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.3e-10 69.3 113 47.8
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.0e-10 68.9 102 49.0
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 5.1e-10 68.2 83 50.6
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 8.8e-10 67.4 101 49.5
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.1e-09 67.0 90 48.9
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.5e-09 66.6 88 51.1
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.6e-09 65.9 89 52.8
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.7e-08 63.2 81 48.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.7e-08 63.2 81 49.4
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 2.2e-08 62.8 81 46.9
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 2.2e-08 62.8 57 66.7
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.8e-08 62.4 81 48.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 3.7e-08 62.0 81 46.9
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.7e-08 62.0 81 49.4
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.7e-08 62.0 81 48.1
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 4.8e-08 61.6 81 48.1
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 4.8e-08 61.6 87 49.4
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.1e-07 60.5 85 50.6
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.1e-07 60.5 89 44.9
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-07 60.1 86 45.3
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-07 60.1 81 46.9
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 1.4e-07 60.1 81 46.9
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.8e-07 59.7 81 45.7
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-07 59.7 87 44.8
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.8e-07 59.7 81 46.9
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.8e-07 59.7 87 44.8
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.8e-07 59.7 81 45.7
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 1.8e-07 59.7 116 37.9
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 2.4e-07 59.3 75 46.7
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 3.1e-07 58.9 81 44.4
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 3.1e-07 58.9 81 44.4
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.1e-07 58.9 81 44.4
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.1e-07 58.9 81 44.4
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 4.1e-07 58.5 81 44.4
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 4.1e-07 58.5 81 44.4
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 4.1e-07 58.5 81 44.4
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.1e-07 58.5 88 42.0
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.3e-07 58.2 73 46.6
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 5.3e-07 58.2 91 41.8
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 5.3e-07 58.2 88 45.5
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 5.3e-07 58.2 93 43.0
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 9.1e-07 57.4 81 45.7
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 9.1e-07 57.4 86 44.2
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 9.1e-07 57.4 81 43.2
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 1.5e-06 56.6 81 44.4
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.0e-06 56.2 82 43.9
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-06 56.2 83 41.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-06 56.2 83 41.0
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 2.0e-06 56.2 83 41.0
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.0e-06 56.2 113 40.7
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.6e-06 55.8 93 41.9
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 3.4e-06 55.5 75 44.0
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.4e-06 55.5 85 49.4
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.9e-06 54.7 82 42.7
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 7.7e-06 54.3 54 51.9
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 7.7e-06 54.3 86 41.9


User provided reference genes

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