Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 1.2e-143 513.1 251 100.0
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.5e-101 373.2 252 74.6
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 2.9e-100 369.0 252 72.6
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 3.8e-100 368.6 252 74.2
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 6.4e-100 367.9 252 73.8
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 2.4e-99 365.9 252 73.4
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 4.2e-99 365.2 253 72.3
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 7.1e-99 364.4 254 71.7
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 9.3e-99 364.0 247 71.7
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.2e-98 363.6 253 71.5
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.5e-98 362.1 254 72.0
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 3.9e-97 358.6 213 78.9
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 1.5e-96 356.7 224 77.2
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 3.3e-96 355.5 251 70.5
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.6e-96 354.8 251 70.1
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 7.3e-96 354.4 255 69.8
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.6e-95 353.2 251 70.5
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 2.1e-95 352.8 256 71.1
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 2.8e-95 352.4 215 78.6
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.8e-95 352.4 215 79.5
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.6e-95 352.1 215 79.5
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 8.1e-95 350.9 253 70.4
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 1.4e-94 350.1 252 69.4
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.4e-94 349.4 215 78.6
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 3.1e-94 349.0 252 67.9
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 3.1e-94 349.0 252 69.4
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 6.9e-94 347.8 251 70.1
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.5e-93 346.7 252 68.3
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.8e-93 344.7 251 68.5
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.7e-92 343.2 255 67.5
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 1.7e-92 343.2 252 68.3
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.4e-91 339.3 215 75.8
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 4.2e-91 338.6 263 65.0
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.2e-90 337.0 215 75.3
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.1e-90 336.3 255 67.5
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 3.5e-90 335.5 274 63.5
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 4.6e-90 335.1 258 66.7
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 6.0e-90 334.7 251 66.5
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 7.9e-90 334.3 215 74.9
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.7e-89 333.2 251 66.1
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 3.0e-89 332.4 273 63.7
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 3.0e-89 332.4 254 65.7
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 3.9e-89 332.0 237 70.5
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 2.5e-88 329.3 215 75.3
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 4.3e-88 328.6 238 70.6
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 7.3e-88 327.8 233 67.8
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 9.6e-88 327.4 283 60.4
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 2.8e-87 325.9 327 53.5
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.4e-86 323.6 222 73.4
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.8e-86 323.2 248 66.5
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.0e-86 322.0 271 61.6
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 5.3e-86 321.6 201 77.6
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 9.0e-86 320.9 223 72.6
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.0e-86 320.9 222 73.0
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.0e-86 320.9 222 73.0
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.2e-85 320.5 223 72.6
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 2.6e-85 319.3 221 70.1
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 2.6e-85 319.3 215 72.1
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 4.5e-85 318.5 215 72.1
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 1.7e-84 316.6 251 62.5
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.7e-84 316.6 223 70.9
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 3.8e-84 315.5 200 77.0
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 6.4e-84 314.7 249 65.9
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 3.2e-83 312.4 217 68.2
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 5.4e-83 311.6 251 62.2
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.6e-82 310.1 247 61.5
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 2.1e-82 309.7 221 70.1
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.7e-82 309.3 266 60.5
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 3.5e-82 308.9 247 61.1
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 7.9e-82 307.8 221 68.8
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 6.7e-81 304.7 270 60.4
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.5e-80 303.5 232 63.8
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 7.4e-80 301.2 249 62.2
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 9.6e-80 300.8 248 63.3
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.8e-79 299.3 216 65.7
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.7e-79 298.9 197 71.6
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 4.8e-79 298.5 224 66.5
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 3.1e-78 295.8 248 61.3
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 4.0e-78 295.4 249 61.4
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 4.0e-78 295.4 249 61.4
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.6e-77 292.7 223 66.8
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 2.6e-77 292.7 223 66.8
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 7.6e-77 291.2 228 64.5
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.7e-76 290.0 250 59.2
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 4.9e-76 288.5 223 65.0
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 5.5e-75 285.0 196 69.9
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 1.6e-74 283.5 220 65.0
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 1.6e-74 283.5 220 65.5
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 2.1e-74 283.1 220 63.6
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 2.1e-74 283.1 223 63.7
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 2.1e-74 283.1 164 81.7
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 4.6e-74 282.0 202 67.3
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 6.0e-74 281.6 224 62.9
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 2.3e-73 279.6 194 68.6
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 3.0e-73 279.3 195 69.2
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.7e-73 277.7 215 61.4
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.5e-72 276.9 284 51.4
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.6e-71 273.5 194 67.0
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 2.8e-71 272.7 221 62.0
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 2.8e-71 272.7 196 66.8
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 4.8e-71 271.9 195 67.2
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 6.2e-71 271.6 195 67.2
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.1e-70 269.2 255 54.1
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 5.3e-70 268.5 254 53.5
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 3.4e-69 265.8 254 56.3
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 2.7e-66 256.1 215 60.9
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 2.3e-65 253.1 236 55.5
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 6.9e-62 241.5 252 51.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 5.0e-60 235.3 255 49.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 9.4e-59 231.1 193 59.6
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 6.1e-50 201.8 252 45.6
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 3.7e-39 166.0 152 55.3
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 2.9e-36 156.4 208 37.5
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 9.4e-35 151.4 190 38.9
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 5.9e-29 132.1 110 63.6
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.0e-25 121.3 152 37.5
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 2.2e-23 113.6 182 37.9
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 2.6e-16 90.1 88 52.3


User provided reference genes

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