Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00440 Coffea canephora HOM05D006062 ORTHO05D007613 4.4e-136 488.0 259 100.0
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 1.3e-92 343.6 281 70.5
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 2.5e-91 339.3 278 68.0
Sopen03g027600 Solanum pennellii HOM05D006062 ORTHO05D007613 2.8e-90 335.9 282 69.5
Solyc03g096850.4 Solanum lycopersicum HOM05D006062 ORTHO05D007613 6.2e-90 334.7 282 69.1
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 1.1e-89 334.0 281 67.3
Rhsim09G0211900 Rhododendron simsii HOM05D006062 ORTHO05D007613 1.1e-89 334.0 261 72.8
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 4.0e-89 332.0 281 68.3
PGSC0003DMG400000569 Solanum tuberosum HOM05D006062 ORTHO05D007613 1.5e-88 330.1 282 68.4
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.6e-88 329.3 279 66.3
CAN.G303.70 Capsicum annuum HOM05D006062 ORTHO05D007613 4.4e-88 328.6 289 67.1
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 5.8e-88 328.2 280 68.2
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 7.6e-88 327.8 281 67.6
ClCG01G005020 Citrullus lanatus HOM05D006062 ORTHO05D007613 9.9e-88 327.4 261 71.3
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 1.7e-87 326.6 274 65.7
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 2.2e-87 326.2 277 66.8
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 3.8e-87 325.5 280 68.2
Potri.019G042600 Populus trichocarpa HOM05D006062 ORTHO05D007613 3.8e-87 325.5 280 66.4
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 1.4e-86 323.6 281 66.5
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 3.2e-86 322.4 279 67.0
CSS0001214 Camellia sinensis var. sinensis HOM05D006062 ORTHO05D007613 4.2e-86 322.0 299 63.2
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 4.2e-86 322.0 251 70.9
Glyma.11G012700 Glycine max HOM05D006062 ORTHO05D007613 7.1e-86 321.2 279 66.7
CiPaw.06G020400 Carya illinoinensis HOM05D006062 ORTHO05D007613 9.3e-86 320.9 279 65.6
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 1.2e-85 320.5 281 65.8
Hma1.2p1_0758F.1_g213550 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 1.6e-85 320.1 263 69.2
AUR62005918 Chenopodium quinoa HOM05D006062 ORTHO05D007613 2.1e-85 319.7 261 70.1
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 1.0e-84 317.4 280 65.7
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 2.3e-84 316.2 272 67.3
Ah.13g071240 Amaranthus hybridus HOM05D006062 ORTHO05D007613 6.6e-84 314.7 262 68.3
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 1.1e-83 313.9 281 66.2
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 1.9e-83 313.2 279 64.2
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 1.9e-83 313.2 281 66.9
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 1.9e-83 313.2 279 64.2
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 2.5e-83 312.8 280 63.6
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 1.6e-82 310.1 282 64.2
Medtr5g008050 Medicago truncatula HOM05D006062 ORTHO05D007613 1.6e-82 310.1 274 63.9
Psat2g187840 Pisum sativum HOM05D006062 ORTHO05D007613 4.8e-82 308.5 278 64.7
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 1.8e-81 306.6 279 65.6
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 3.1e-81 305.8 258 66.3
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 3.1e-81 305.8 280 64.3
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 4.0e-81 305.4 279 64.9
Peaxi162Scf01650g00050 Petunia axillaris HOM05D006062 ORTHO05D007613 4.0e-81 305.4 270 66.7
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 5.3e-81 305.1 280 62.9
TPR.G37875 Trifolium pratense HOM05D006062 ORTHO05D007613 6.9e-81 304.7 280 63.6
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 2.0e-80 303.1 271 64.9
Hma1.2p1_0758F.1_g213560 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 2.6e-80 302.8 239 69.5
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 4.5e-80 302.0 283 62.5
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 9.9e-80 300.8 238 71.0
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 1.7e-79 300.1 277 63.5
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 2.2e-79 299.7 255 67.1
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 3.2e-78 295.8 280 63.6
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 4.2e-78 295.4 278 62.6
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 2.1e-77 293.1 277 62.5
Sabra19G0053200 Salix brachista HOM05D006062 ORTHO05D007613 2.7e-77 292.7 341 53.4
A02p03960 Brassica napus HOM05D006062 ORTHO05D007613 6.0e-77 291.6 277 63.2
MBI04_g27273_MAGBIO Magnolia biondii HOM05D006062 ORTHO05D007613 7.9e-77 291.2 259 64.9
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 1.3e-76 290.4 276 62.3
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 2.3e-76 289.7 275 61.8
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 2.3e-76 289.7 272 62.5
BraA02t05361Z Brassica rapa HOM05D006062 ORTHO05D007613 3.0e-76 289.3 281 62.3
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 3.9e-76 288.9 277 61.0
BcaC03g18534 Brassica carinata HOM05D006062 ORTHO05D007613 5.1e-76 288.5 278 63.3
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 5.1e-76 288.5 290 60.3
Sp6g27050 Schrenkiella parvula HOM05D006062 ORTHO05D007613 8.7e-76 287.7 278 61.9
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 1.1e-75 287.3 278 62.6
BolC2t06792H Brassica oleracea HOM05D006062 ORTHO05D007613 2.5e-75 286.2 281 62.3
Aa31LG11G12480 Aethionema arabicum HOM05D006062 ORTHO05D007613 4.3e-75 285.4 279 61.6
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 4.3e-75 285.4 281 59.4
C02p08780 Brassica napus HOM05D006062 ORTHO05D007613 5.6e-75 285.0 277 62.5
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 1.6e-74 283.5 288 59.4
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 1.6e-74 283.5 288 59.4
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 1.6e-74 283.5 278 61.2
BcaNung00424 Brassica carinata HOM05D006062 ORTHO05D007613 3.7e-74 282.3 278 61.5
CARHR196050 Cardamine hirsuta HOM05D006062 ORTHO05D007613 3.7e-74 282.3 278 61.5
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 1.1e-73 280.8 282 59.6
AL6G28220 Arabidopsis lyrata HOM05D006062 ORTHO05D007613 2.4e-73 279.6 271 61.3
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 3.1e-73 279.3 204 72.1
AT5G17170 Arabidopsis thaliana HOM05D006062 ORTHO05D007613 4.0e-73 278.9 278 60.4
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 5.3e-73 278.5 204 72.1
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 1.5e-72 276.9 239 64.4
Haze_00586 Corylus avellana HOM05D006062 ORTHO05D007613 5.8e-72 275.0 261 63.6
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 3.8e-71 272.3 254 61.4
EL10Ac3g05103 Beta vulgaris HOM05D006062 ORTHO05D007613 1.0e-68 264.2 276 59.4
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 1.3e-68 263.8 249 60.6
AUR62028145 Chenopodium quinoa HOM05D006062 ORTHO05D007613 3.0e-68 262.7 258 62.4
BolC9t58838H Brassica oleracea HOM05D006062 ORTHO05D007613 2.8e-66 256.1 274 57.7
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 4.8e-66 255.4 235 63.4
Mapoly0041s0075 Marchantia polymorpha HOM05D006062 ORTHO05D007613 1.1e-65 254.2 201 65.7
C09p60030 Brassica napus HOM05D006062 ORTHO05D007613 1.2e-64 250.8 217 65.0
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 2.0e-64 250.0 200 69.0
Lsat_1_v5_gn_8_3801 Lactuca sativa HOM05D006062 ORTHO05D007613 4.5e-64 248.8 268 57.1
Pp3c10_15730 Physcomitrium patens HOM05D006062 ORTHO05D007613 1.4e-62 243.8 216 62.0
Nitab4.5_0002302g0030 Nicotiana tabacum HOM05D006062 ORTHO05D007613 1.9e-62 243.4 264 60.2
Lj3A890T59 Lonicera japonica HOM05D006062 ORTHO05D007613 5.5e-62 241.9 203 70.0
BcaC04g18827 Brassica carinata HOM05D006062 ORTHO05D007613 6.0e-61 238.4 287 54.7
TAR375G0226 Trochodendron aralioides HOM05D006062 ORTHO05D007613 6.0e-61 238.4 201 68.7
COL.COLO4_08912 Corchorus olitorius HOM05D006062 ORTHO05D007613 3.9e-60 235.7 203 66.5
FAN10G3926 Fragaria x ananassa HOM05D006062 ORTHO05D007613 7.4e-59 231.5 207 65.7
FAN10G2030 Fragaria x ananassa HOM05D006062 ORTHO05D007613 9.7e-59 231.1 207 65.7
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 1.6e-58 230.3 225 60.9
FAN01G1199 Fragaria x ananassa HOM05D006062 ORTHO05D007613 2.2e-58 229.9 207 65.7
A10p22220 Brassica napus HOM05D006062 ORTHO05D007613 8.2e-58 228.0 181 68.5
BraA10t44281Z Brassica rapa HOM05D006062 ORTHO05D007613 8.2e-58 228.0 181 68.5
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 2.6e-56 223.0 279 50.9
Sc25g0001120 Simmondsia chinensis HOM05D006062 ORTHO05D007613 4.5e-56 222.2 212 62.7
Nn1g02035 Nelumbo nucifera HOM05D006062 ORTHO05D007613 7.2e-54 214.9 143 78.3
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 1.0e-52 211.1 225 57.3
CDE02G0118 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 1.1e-51 207.6 215 59.1
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 2.5e-51 206.5 174 66.1
Dinv29176 Davidia involucrata HOM05D006062 ORTHO05D007613 4.5e-48 195.7 170 67.6
Cc11_g03890 Coffea canephora HOM05D006062 ORTHO05D007613 2.1e-45 186.8 207 57.5
unitig_52.g17697 Utricularia gibba HOM05D006062 ORTHO05D007613 3.9e-44 182.6 149 67.8
MD01G1233200 Malus domestica HOM05D006062 ORTHO05D007613 9.7e-43 177.9 192 57.8
Duzib187G0879 Durio zibethinus HOM05D006062 ORTHO05D007613 2.8e-42 176.4 132 69.7
Nitab4.5_0000021g0330 Nicotiana tabacum HOM05D006062 ORTHO05D007613 6.3e-34 148.7 262 45.8
TAR375G0371 Trochodendron aralioides HOM05D006062 ORTHO05D007613 1.8e-33 147.1 115 65.2
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 7.0e-33 145.2 216 44.0
AagrBONN_evm.TU.Sc2ySwM_117.4047 Anthoceros agrestis HOM05D006062 ORTHO05D007613 1.2e-32 144.4 145 57.2
CBR_g41688 Chara braunii HOM05D006062 ORTHO05D007613 2.9e-31 139.8 124 62.9
Aqoxy1G04105 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 1.2e-27 127.9 99 68.7
PRCOL_00001509 Prasinoderma coloniale HOM05D006062 ORTHO05D007613 7.2e-22 108.6 212 38.7
Oeu033092.1 Olea europaea HOM05D006062 ORTHO05D007613 8.0e-21 105.1 54 90.7
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 1.3e-18 97.8 56 87.5
Lj3A890T58 Lonicera japonica HOM05D006062 ORTHO05D007613 2.8e-18 96.7 59 79.7
COL.COLO4_08913 Corchorus olitorius HOM05D006062 ORTHO05D007613 1.8e-17 94.0 59 78.0
FAN03G0703 Fragaria x ananassa HOM05D006062 ORTHO05D007613 5.4e-17 92.4 57 80.7
Duzib177G0960 Durio zibethinus HOM05D006062 ORTHO05D007613 9.5e-14 81.6 107 54.2
CDE02G3588 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 9.8e-11 71.6 185 36.8
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 3.2e-09 66.6 56 55.4
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 2.3e-07 60.5 125 34.4
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 6.6e-07 58.9 70 42.9
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 1.5e-06 57.8 70 41.4
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 1.9e-06 57.4 168 31.0
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.9e-06 57.4 70 41.4
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 2.5e-06 57.0 70 40.0
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 2.5e-06 57.0 70 42.9
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 3.3e-06 56.6 70 40.0
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 3.3e-06 56.6 70 42.9
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 4.3e-06 56.2 70 41.4
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 4.3e-06 56.2 70 41.4
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 4.3e-06 56.2 70 41.4
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 4.3e-06 56.2 110 33.6
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 4.3e-06 56.2 110 33.6
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 5.6e-06 55.8 70 40.0
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 5.6e-06 55.8 70 40.0
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 5.6e-06 55.8 70 40.0
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 5.6e-06 55.8 70 42.9
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 5.6e-06 55.8 70 38.6
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 7.3e-06 55.5 70 41.4
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 9.5e-06 55.1 72 40.3
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 9.5e-06 55.1 110 34.5
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 9.5e-06 55.1 70 41.4
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 9.5e-06 55.1 113 32.7
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 9.5e-06 55.1 70 41.4


User provided reference genes

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