Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 5.4e-64 247.7 139 100.0
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 5.4e-24 114.8 140 58.6
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 2.1e-23 112.8 140 57.1
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 7.8e-23 110.9 139 52.5
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 6.6e-22 107.8 139 54.7
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 6.6e-22 107.8 139 54.7
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 8.6e-22 107.5 118 60.2
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 1.1e-21 107.1 138 54.3
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 3.3e-21 105.5 140 55.0
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 4.3e-21 105.1 140 58.6
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 1.2e-20 103.6 139 49.6
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 2.1e-20 102.8 140 51.4
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 2.8e-20 102.4 137 54.0
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 2.8e-20 102.4 143 53.1
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 3.6e-20 102.1 142 51.4
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 8.1e-20 100.9 140 50.0
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 8.1e-20 100.9 139 51.8
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 2.4e-19 99.4 120 55.8
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 6.8e-19 97.8 140 50.7
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 8.9e-19 97.4 140 52.1
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 8.9e-19 97.4 139 51.8
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 8.9e-19 97.4 137 52.6
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 8.9e-19 97.4 139 48.9
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 1.2e-18 97.1 139 49.6
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 1.2e-18 97.1 141 52.5
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 1.5e-18 96.7 111 54.1
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.5e-18 96.7 162 47.5
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 1.5e-18 96.7 96 59.4
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 2.0e-18 96.3 143 51.7
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 2.0e-18 96.3 79 67.1
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 2.0e-18 96.3 140 52.1
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 3.4e-18 95.5 139 52.5
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 3.4e-18 95.5 140 51.4
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 4.4e-18 95.1 140 52.9
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 5.8e-18 94.7 141 50.4
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 5.8e-18 94.7 140 51.4
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 5.8e-18 94.7 112 56.2
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 7.6e-18 94.4 80 66.2
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 7.6e-18 94.4 80 66.2
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 2.2e-17 92.8 145 48.3
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 2.2e-17 92.8 118 57.6
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 2.2e-17 92.8 143 49.0
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 2.9e-17 92.4 140 52.1
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 3.8e-17 92.0 142 50.0
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 4.9e-17 91.7 140 55.0
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 4.9e-17 91.7 140 47.1
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 4.9e-17 91.7 136 50.0
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 4.9e-17 91.7 141 47.5
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 6.4e-17 91.3 140 54.3
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 1.1e-16 90.5 84 58.3
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 1.1e-16 90.5 84 58.3
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.1e-16 90.5 139 49.6
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.4e-16 90.1 137 48.9
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 1.4e-16 90.1 145 49.0
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.4e-16 90.1 140 47.9
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.4e-16 90.1 137 46.0
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.9e-16 89.7 72 62.5
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 1.9e-16 89.7 120 52.5
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 1.9e-16 89.7 140 46.4
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.9e-16 89.7 140 46.4
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 1.9e-16 89.7 145 49.0
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 2.4e-16 89.4 163 44.2
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 2.4e-16 89.4 74 66.2
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 3.2e-16 89.0 139 48.9
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 7.1e-16 87.8 139 48.2
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 1.2e-15 87.0 140 49.3
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 1.6e-15 86.7 99 54.5
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 2.1e-15 86.3 140 47.1
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 2.1e-15 86.3 139 45.3
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 2.7e-15 85.9 132 46.2
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 2.7e-15 85.9 139 51.1
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 3.5e-15 85.5 72 61.1
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 4.6e-15 85.1 139 48.2
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 6.0e-15 84.7 114 46.5
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 1.0e-14 84.0 141 46.1
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 1.3e-14 83.6 139 43.2
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 1.3e-14 83.6 139 43.9
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.7e-14 83.2 116 50.0
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 3.0e-14 82.4 120 45.0
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 3.9e-14 82.0 111 52.3
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 5.1e-14 81.6 139 42.4
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 2.5e-13 79.3 139 41.0
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 2.5e-13 79.3 139 41.7
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 2.5e-13 79.3 139 41.7
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 2.5e-13 79.3 139 41.7
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 2.5e-13 79.3 162 42.6
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 4.3e-13 78.6 139 40.3
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 4.3e-13 78.6 139 40.3
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 5.6e-13 78.2 141 42.6
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 9.6e-13 77.4 139 38.8
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 9.6e-13 77.4 139 41.0
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 1.3e-12 77.0 141 44.0
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 6.2e-12 74.7 139 39.6
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 8.1e-12 74.3 139 36.7
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 8.1e-12 74.3 139 39.6
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 1.1e-11 73.9 139 41.0
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.4e-11 73.6 141 44.7
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 3.1e-11 72.4 140 39.3
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 1.5e-10 70.1 90 47.8
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 2.0e-10 69.7 70 51.4
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 9.9e-10 67.4 140 43.6
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 1.7e-09 66.6 139 35.3
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 2.2e-09 66.2 79 50.6
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 4.9e-09 65.1 143 37.8
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 4.9e-09 65.1 139 38.1
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 6.4e-09 64.7 140 42.9
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 3.5e-07 58.9 120 40.0
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 6.0e-07 58.2 142 36.6


User provided reference genes

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