Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.9e-193 677.9 338 100.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.1e-131 473.8 338 70.4
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.6e-130 468.8 338 68.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 9.8e-128 460.7 338 68.9
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.7e-127 459.9 338 66.3
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.7e-127 459.9 338 66.9
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.7e-127 458.8 338 68.6
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-126 457.2 338 68.0
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.4e-126 454.9 338 66.3
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 9.2e-126 454.1 338 67.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.0e-125 453.0 338 66.9
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 7.7e-125 451.1 338 66.6
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 5.0e-124 448.4 338 66.6
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 5.0e-124 448.4 338 67.2
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.6e-124 447.6 338 69.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.3e-123 445.7 338 65.4
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 4.3e-123 445.3 339 65.8
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.3e-123 445.3 338 66.9
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 4.3e-123 445.3 338 65.4
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.3e-123 445.3 338 67.2
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.1e-122 443.0 378 59.5
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.7e-122 441.8 338 65.7
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 4.7e-122 441.8 338 68.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 6.1e-122 441.4 338 65.1
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.0e-121 440.7 338 65.7
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.2e-121 438.3 338 65.7
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.9e-121 437.6 338 65.4
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.5e-120 436.8 338 65.4
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.0e-120 436.4 340 67.6
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.4e-120 435.6 338 64.5
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.4e-120 435.3 345 64.3
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 4.4e-120 435.3 341 63.3
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.4e-120 435.3 338 66.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.7e-120 434.9 338 64.8
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 7.5e-120 434.5 338 64.8
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.8e-120 434.1 338 64.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 9.8e-120 434.1 339 64.9
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.7e-119 433.3 338 67.5
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.2e-119 433.0 321 67.0
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.9e-119 432.6 338 64.2
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.7e-119 432.2 338 68.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 4.9e-119 431.8 338 63.9
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 8.3e-119 431.0 394 57.6
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 2.4e-118 429.5 338 63.6
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 2.4e-118 429.5 401 56.1
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 7.0e-118 427.9 339 64.0
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 9.2e-118 427.6 343 63.6
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.5e-117 425.6 329 67.8
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.3e-116 423.7 338 63.0
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.1e-115 420.6 338 63.3
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.5e-115 419.5 323 67.2
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 4.3e-115 418.7 338 63.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.2e-114 417.2 338 62.7
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.6e-114 416.8 338 60.1
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.8e-114 416.0 338 62.4
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 6.2e-114 414.8 338 59.8
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.8e-113 413.3 352 59.7
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.3e-113 412.9 338 60.9
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 4.0e-113 412.1 338 59.8
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 5.2e-113 411.8 338 60.7
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 8.9e-113 411.0 338 59.2
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 3.4e-112 409.1 339 61.7
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.4e-112 409.1 338 60.9
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 5.8e-112 408.3 338 61.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.7e-111 406.8 338 60.7
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 2.2e-111 406.4 338 62.1
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.2e-111 406.4 340 62.1
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.9e-111 406.0 340 62.1
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.7e-111 405.6 338 61.5
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 6.4e-111 404.8 320 63.4
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 8.3e-111 404.4 338 59.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 4.1e-110 402.1 356 59.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 7.0e-110 401.4 338 59.5
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 9.2e-110 401.0 338 61.2
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.7e-109 399.4 340 59.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.5e-109 399.1 340 62.1
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.0e-109 398.3 340 62.4
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 7.8e-109 397.9 339 61.4
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 7.8e-109 397.9 339 61.4
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.0e-108 397.5 339 60.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.0e-108 397.5 338 63.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 2.3e-108 396.4 339 58.4
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 8.6e-108 394.4 338 60.4
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.1e-107 394.0 339 58.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.5e-107 392.9 340 59.4
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.3e-107 392.1 339 60.8
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 5.6e-107 391.7 338 58.6
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 9.5e-107 391.0 340 59.1
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 6.2e-106 388.3 338 59.8
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 8.1e-106 387.9 338 58.9
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.0e-105 385.6 339 59.6
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.5e-104 383.6 348 56.9
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.0e-104 383.3 376 56.1
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 5.8e-104 381.7 348 56.9
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 5.8e-104 381.7 378 53.7
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 9.2e-102 374.4 383 53.5
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.1e-101 373.2 339 59.6
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.5e-101 372.5 364 53.6
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.0e-100 370.9 321 57.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.0e-100 369.4 374 52.9
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 8.6e-100 367.9 340 57.6
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.7e-98 362.1 360 53.1
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.8e-97 360.1 304 61.8
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 5.2e-97 358.6 258 69.0
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.9e-95 352.1 343 56.6
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 7.1e-94 348.2 293 62.5
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.1e-93 346.7 339 51.9
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.6e-92 341.3 283 61.8
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.8e-90 336.3 338 51.2
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 6.9e-89 331.6 340 50.6
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.1e-86 324.3 338 53.8
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 6.0e-85 318.5 377 48.0
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.0e-84 316.2 319 54.5
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 9.6e-83 311.2 236 65.3
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.8e-82 309.7 247 60.7
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.3e-76 290.8 339 49.9
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.4e-73 280.0 303 52.1
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.3e-71 274.2 211 65.4
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.9e-71 272.3 331 48.9
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 6.4e-71 271.9 210 65.2
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.4e-70 270.0 171 73.1
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.5e-70 268.9 321 45.5
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.5e-69 266.2 257 53.7
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.9e-67 260.4 270 53.0
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 6.2e-66 255.4 306 47.7
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.0e-63 248.1 338 39.9
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 2.1e-61 240.4 145 80.7
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.4e-57 227.6 170 62.9
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 6.9e-57 225.3 165 66.7
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.5e-56 224.2 338 40.2
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 7.6e-56 221.9 145 75.2
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.2e-54 215.3 159 69.2
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.9e-45 185.3 264 42.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 3.9e-44 183.0 177 54.8
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.7e-42 176.4 166 55.4
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.1e-41 174.9 168 57.7
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 8.0e-37 158.7 142 57.7
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.4e-36 157.9 310 34.5
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.9e-36 156.4 354 32.5
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 9.1e-33 145.2 223 36.8
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 3.8e-31 139.8 139 52.5
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 5.0e-31 139.4 216 34.3
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.5e-30 137.9 134 58.2
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.9e-30 137.5 84 77.4
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.0e-27 127.5 130 53.8
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.1e-25 120.2 330 28.8
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.8e-23 113.2 169 42.6
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-19 100.9 80 61.2
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 4.4e-19 99.8 80 61.2
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 4.4e-19 99.8 80 61.2
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 5.7e-19 99.4 86 58.1
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.4e-17 94.0 66 60.6
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.8e-15 86.7 81 50.6
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 3.8e-15 86.7 102 52.0
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 1.1e-14 85.1 61 70.5
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.9e-14 84.3 116 43.1
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 6.1e-13 79.3 58 67.2
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 2.6e-11 73.9 61 63.9
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 3.7e-10 70.1 62 59.7
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 2.5e-06 57.4 40 60.0


User provided reference genes

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