Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 9.5e-50 199.9 103 100.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.2e-37 158.3 78 84.6
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 7.0e-37 157.1 78 83.3
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 6.0e-36 154.1 78 80.8
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.0e-35 153.3 78 82.1
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.3e-35 152.1 81 80.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.9e-35 151.4 74 83.8
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.9e-35 151.4 78 80.8
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 5.1e-35 151.0 78 82.1
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 5.1e-35 151.0 78 80.8
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 6.6e-35 150.6 78 82.1
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 6.6e-35 150.6 78 82.1
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 8.6e-35 150.2 78 80.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.6e-35 150.2 78 80.8
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.1e-34 149.8 78 79.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.1e-34 149.8 78 80.8
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.5e-34 149.4 78 79.5
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.9e-34 149.1 78 80.8
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.5e-34 148.7 78 80.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.3e-34 147.9 78 78.2
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.3e-34 147.9 78 78.2
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 4.3e-34 147.9 77 77.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 4.3e-34 147.9 78 79.5
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 7.3e-34 147.1 77 77.9
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 7.3e-34 147.1 78 76.9
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.2e-33 146.4 78 76.9
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.2e-33 146.4 78 76.9
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.2e-33 146.4 78 78.2
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.6e-33 146.0 78 78.2
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.6e-33 146.0 78 78.2
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.1e-33 145.6 75 81.3
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.1e-33 145.6 74 79.7
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 2.1e-33 145.6 76 80.3
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.8e-33 145.2 78 80.8
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.8e-33 145.2 78 76.9
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 4.7e-33 144.4 75 77.3
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.7e-33 144.4 76 77.6
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 6.2e-33 144.1 76 78.9
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 6.2e-33 144.1 78 75.6
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 6.2e-33 144.1 78 78.2
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 6.2e-33 144.1 78 78.2
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 8.1e-33 143.7 78 76.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.1e-32 143.3 78 76.9
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.1e-32 143.3 78 78.2
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.4e-32 142.9 76 77.6
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.8e-32 142.5 76 80.3
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.8e-32 142.5 78 76.9
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 2.3e-32 142.1 101 66.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 2.3e-32 142.1 76 77.6
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.3e-32 142.1 76 77.6
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 3.1e-32 141.7 76 80.3
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 3.1e-32 141.7 76 80.3
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.0e-32 141.4 78 76.9
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 4.0e-32 141.4 76 75.0
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 6.8e-32 140.6 78 74.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 6.8e-32 140.6 78 74.4
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.0e-31 139.0 76 75.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.6e-31 138.7 76 73.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 3.4e-31 138.3 78 75.6
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.4e-31 137.9 77 75.3
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 4.4e-31 137.9 78 74.4
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 5.8e-31 137.5 76 77.6
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 5.8e-31 137.5 76 75.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 7.5e-31 137.1 107 62.6
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 7.5e-31 137.1 76 75.0
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 9.9e-31 136.7 76 76.3
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 9.9e-31 136.7 77 75.3
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.3e-30 136.3 74 77.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.2e-30 135.6 78 73.1
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.2e-30 135.6 76 72.4
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 4.9e-30 134.4 80 76.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 4.9e-30 134.4 76 73.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.4e-30 134.0 76 71.1
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 8.3e-30 133.7 78 73.1
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 8.3e-30 133.7 76 73.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.1e-29 133.3 76 71.1
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 3.2e-29 131.7 107 59.8
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 1.1e-26 123.2 122 50.0
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.3e-22 109.8 154 40.3
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.6e-20 101.3 70 62.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.3e-18 95.1 76 57.9
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 4.0e-16 88.2 43 83.7
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 5.3e-16 87.8 185 30.8
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 9.0e-16 87.0 42 83.3
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 3.8e-14 81.6 42 78.6
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.8e-14 81.6 41 85.4
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 8.4e-14 80.5 41 80.5
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 1.7e-11 72.8 38 76.3
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 6.6e-11 70.9 37 75.7
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.1e-10 70.1 37 75.7
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 3.3e-10 68.6 82 39.0
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.3e-10 68.2 36 75.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 5.6e-10 67.8 79 40.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 7.3e-10 67.4 79 39.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 9.6e-10 67.0 79 39.2
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 9.6e-10 67.0 37 75.7
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.3e-09 66.6 79 38.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.3e-09 66.6 82 37.8
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.6e-09 66.2 32 84.4
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.6e-09 66.2 81 38.3
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.1e-09 65.9 83 37.3
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 2.1e-09 65.9 79 38.0
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.1e-09 65.9 79 39.2
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.8e-09 65.5 78 35.9
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.8e-09 65.5 81 35.8
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.8e-09 65.5 81 37.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 2.8e-09 65.5 82 36.6
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 3.6e-09 65.1 82 37.8
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 3.6e-09 65.1 79 38.0
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.6e-09 65.1 82 36.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.6e-09 65.1 79 38.0
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 3.6e-09 65.1 79 38.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 4.8e-09 64.7 79 38.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 4.8e-09 64.7 79 38.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.2e-09 64.3 82 36.6
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 6.2e-09 64.3 79 38.0
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 8.1e-09 63.9 79 36.7
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.1e-08 63.5 82 35.4
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.1e-08 63.5 82 35.4
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.1e-08 63.5 79 36.7
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.1e-08 63.5 82 35.4
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.1e-08 63.5 82 36.6
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.4e-08 63.2 79 38.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.4e-08 63.2 79 38.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 36.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 36.7
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 35.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 36.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 36.7
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 35.4
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.8e-08 62.8 78 35.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.8e-08 62.8 83 36.1
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.8e-08 62.8 79 36.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.8e-08 62.8 82 35.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.4e-08 62.4 83 36.1
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 36.7
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 36.7
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 36.7
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 36.7
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 36.7
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 35.4
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 36.7
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 3.1e-08 62.0 79 35.4
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 3.1e-08 62.0 83 34.9
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.1e-08 62.0 34 70.6
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 3.1e-08 62.0 79 36.7
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 4.0e-08 61.6 82 34.1
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 5.3e-08 61.2 79 35.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 5.3e-08 61.2 82 35.4
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 6.9e-08 60.8 83 34.9
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 9.0e-08 60.5 95 33.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 9.0e-08 60.5 83 34.9
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 1.5e-07 59.7 79 31.6
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 2.0e-07 59.3 83 33.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.0e-07 59.3 79 34.2
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.0e-07 59.3 83 34.9
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 3.4e-07 58.5 79 34.2
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 4.5e-07 58.2 79 34.2
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 5.8e-07 57.8 82 34.1
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.8e-07 57.8 82 34.1
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.8e-07 57.8 82 34.1
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 5.8e-07 57.8 82 34.1
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 5.8e-07 57.8 81 33.3
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 7.6e-07 57.4 104 29.8
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 7.6e-07 57.4 78 33.3
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 7.6e-07 57.4 79 34.2
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 9.9e-07 57.0 78 30.8
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 1.3e-06 56.6 87 35.6
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 1.7e-06 56.2 77 32.5
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 3.8e-06 55.1 83 32.5
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 4.9e-06 54.7 102 30.4
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 4.9e-06 54.7 79 30.4
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 8.4e-06 53.9 83 31.3


User provided reference genes

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