Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 6.4e-82 307.4 157 100.0
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 4.6e-56 221.5 119 98.3
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.0e-55 220.3 119 97.5
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.3e-55 219.9 119 97.5
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.3e-55 219.9 119 96.6
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.8e-55 219.5 119 96.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.8e-55 219.5 119 96.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.8e-55 219.5 119 95.8
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.8e-55 219.5 119 96.6
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 2.3e-55 219.2 119 95.8
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 3.0e-55 218.8 119 96.6
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.9e-55 218.4 119 96.6
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 6.7e-55 217.6 119 95.8
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 6.7e-55 217.6 119 95.8
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 6.7e-55 217.6 119 95.8
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 6.7e-55 217.6 119 95.8
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 6.7e-55 217.6 119 95.8
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 6.7e-55 217.6 118 95.8
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 6.7e-55 217.6 119 95.8
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.5e-54 216.5 119 95.0
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.5e-54 216.5 119 95.0
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.5e-54 216.5 118 94.9
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.9e-54 216.1 119 95.0
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.9e-54 216.1 119 95.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 3.3e-54 215.3 119 94.1
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 3.3e-54 215.3 119 95.0
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 4.3e-54 214.9 118 94.9
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 4.3e-54 214.9 119 93.3
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 4.3e-54 214.9 119 95.0
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 5.7e-54 214.5 119 94.1
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.7e-54 214.5 119 94.1
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.7e-54 214.5 119 94.1
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 5.7e-54 214.5 119 94.1
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.7e-54 214.5 119 95.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 5.7e-54 214.5 119 94.1
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 95.0
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 95.0
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 95.0
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 95.0
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 95.0
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 95.0
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 7.4e-54 214.2 119 97.5
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 9.7e-54 213.8 119 92.4
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 9.7e-54 213.8 119 95.0
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.3e-53 213.4 119 94.1
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.3e-53 213.4 119 93.3
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.6e-53 213.0 119 94.1
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.6e-53 213.0 119 94.1
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.6e-53 213.0 119 93.3
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.2e-53 212.6 119 94.1
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 2.2e-53 212.6 119 94.1
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.2e-53 212.6 119 94.1
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 2.8e-53 212.2 120 93.3
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 2.8e-53 212.2 120 94.2
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.8e-53 212.2 118 96.6
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 4.8e-53 211.5 119 91.6
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 4.8e-53 211.5 119 93.3
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.3e-53 211.1 119 95.8
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 6.3e-53 211.1 119 93.3
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.1e-52 210.3 119 93.3
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.1e-52 210.3 120 92.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 1.1e-52 210.3 120 92.5
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.1e-52 210.3 120 92.5
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.4e-52 209.9 119 95.8
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 1.4e-52 209.9 119 95.8
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.8e-52 209.5 119 92.4
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.8e-52 209.5 119 90.8
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.4e-52 209.1 119 92.4
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.1e-52 208.8 119 92.4
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 4.1e-52 208.4 119 91.6
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 4.1e-52 208.4 119 91.6
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.3e-52 208.0 119 92.4
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 6.9e-52 207.6 119 89.1
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 6.9e-52 207.6 119 89.1
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 9.1e-52 207.2 120 91.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.5e-51 206.5 119 88.2
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.6e-51 205.7 120 89.2
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.6e-51 205.7 120 89.2
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.0e-47 192.2 111 91.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.1e-47 191.4 111 91.0
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 3.1e-44 182.2 119 78.2
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 2.6e-43 179.1 98 93.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.2e-42 176.0 100 94.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.5e-42 174.5 98 91.8
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.9e-41 172.9 125 76.8
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.2e-40 170.2 118 80.5
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.9e-40 167.5 91 93.4
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 3.9e-39 165.2 92 93.5
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.5e-38 163.3 122 73.8
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 2.0e-35 152.9 122 65.6
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.6e-35 152.5 91 90.1
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.0e-34 150.6 95 86.3
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 4.8e-29 131.7 120 60.8
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.1e-25 120.6 68 98.5
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.1e-25 120.6 68 97.1
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.1e-25 120.6 68 97.1
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.5e-25 120.2 68 97.1
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 2.5e-25 119.4 87 79.3
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 3.6e-24 115.5 70 90.0
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.0e-20 101.3 90 60.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.5e-17 92.8 113 44.2
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 3.6e-16 89.0 116 42.2
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 8.9e-15 84.3 54 85.2
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.6e-14 82.8 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.5e-14 81.3 52 84.6
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 2.8e-13 79.3 124 36.3


User provided reference genes

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