Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 1.1e-84 316.6 163 100.0
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 4.2e-76 288.1 163 90.2
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 1.4e-39 166.8 159 58.5
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 1.8e-39 166.4 159 59.7
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 2.4e-39 166.0 164 59.1
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 4.1e-39 165.2 158 60.1
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 9.1e-39 164.1 159 59.1
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.7e-38 162.5 162 58.6
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 2.7e-38 162.5 162 58.0
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 3.5e-38 162.2 160 57.5
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 4.5e-38 161.8 160 60.6
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 5.9e-38 161.4 159 58.5
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 7.7e-38 161.0 138 66.7
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 2.2e-37 159.5 152 61.2
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 2.2e-37 159.5 122 70.5
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 3.8e-37 158.7 161 55.3
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 8.5e-37 157.5 100 81.0
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 8.5e-37 157.5 100 81.0
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 1.1e-36 157.1 119 70.6
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 1.1e-36 157.1 157 58.0
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 1.5e-36 156.8 119 71.4
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 1.5e-36 156.8 93 83.9
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 1.9e-36 156.4 119 71.4
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 2.5e-36 156.0 131 65.6
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 3.2e-36 155.6 131 64.9
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 3.2e-36 155.6 100 79.0
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 4.2e-36 155.2 111 71.2
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 5.5e-36 154.8 102 79.4
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 5.5e-36 154.8 98 79.6
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 5.5e-36 154.8 98 80.6
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 7.2e-36 154.5 100 79.0
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.2e-35 153.7 109 75.2
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 1.2e-35 153.7 102 80.4
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 2.1e-35 152.9 166 54.2
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 2.7e-35 152.5 91 84.6
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 2.7e-35 152.5 104 74.0
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 3.6e-35 152.1 119 68.1
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 3.6e-35 152.1 100 78.0
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 4.7e-35 151.8 102 77.5
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 4.7e-35 151.8 102 78.4
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 6.1e-35 151.4 119 68.1
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.4e-34 150.2 110 75.5
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 1.4e-34 150.2 163 52.8
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 1.4e-34 150.2 100 80.0
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 2.3e-34 149.4 160 55.0
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 2.3e-34 149.4 116 65.5
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 3.0e-34 149.1 135 60.7
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 4.0e-34 148.7 118 66.9
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 5.2e-34 148.3 111 67.6
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 6.8e-34 147.9 96 80.2
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 6.8e-34 147.9 99 75.8
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 8.8e-34 147.5 167 53.3
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.5e-33 146.7 99 76.8
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 1.5e-33 146.7 99 76.8
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 1.5e-33 146.7 100 76.0
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 2.0e-33 146.4 103 73.8
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 2.6e-33 146.0 91 78.0
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 2.6e-33 146.0 101 74.3
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 4.4e-33 145.2 135 58.5
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 5.7e-33 144.8 105 74.3
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 5.7e-33 144.8 92 78.3
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 7.5e-33 144.4 165 56.4
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.3e-32 143.7 140 57.9
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 1.7e-32 143.3 144 57.6
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 1.7e-32 143.3 135 59.3
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 1.7e-32 143.3 99 74.7
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 1.7e-32 143.3 159 51.6
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 2.2e-32 142.9 101 73.3
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 2.8e-32 142.5 112 67.0
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 2.8e-32 142.5 112 67.0
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 2.8e-32 142.5 112 67.0
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 2.8e-32 142.5 109 67.0
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 4.8e-32 141.7 137 58.4
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 4.8e-32 141.7 145 56.6
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 4.8e-32 141.7 102 70.6
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 6.3e-32 141.4 100 73.0
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 1.1e-31 140.6 143 55.2
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 1.1e-31 140.6 109 66.1
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 1.1e-31 140.6 93 74.2
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 1.4e-31 140.2 86 79.1
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 1.4e-31 140.2 99 71.7
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 1.4e-31 140.2 86 79.1
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 1.4e-31 140.2 99 71.7
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.4e-31 140.2 93 73.1
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 3.1e-31 139.0 106 68.9
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 4.1e-31 138.7 164 52.4
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 7.0e-31 137.9 86 77.9
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 9.1e-31 137.5 100 70.0
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 1.6e-30 136.7 104 66.3
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.7e-30 136.0 100 69.0
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 2.7e-30 136.0 90 73.3
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 3.5e-30 135.6 129 58.1
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 4.5e-30 135.2 101 70.3
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 1.3e-29 133.7 79 84.8
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 2.3e-29 132.9 97 72.2
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 6.6e-29 131.3 97 69.1
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 2.5e-28 129.4 102 65.7
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 4.2e-28 128.6 78 83.3
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 7.2e-28 127.9 77 83.1
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 2.1e-27 126.3 74 83.8
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 8.0e-27 124.4 92 67.4
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 1.0e-26 124.0 122 54.1
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 2.3e-26 122.9 92 68.5
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 3.0e-26 122.5 152 50.7
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 4.0e-26 122.1 93 64.5
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 3.2e-23 112.5 103 63.1
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.3e-21 107.1 159 42.1
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 8.6e-21 104.4 92 56.5
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 2.0e-17 93.2 197 36.5
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.4e-17 92.4 233 33.9
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 1.1e-15 87.4 50 82.0
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 1.1e-15 87.4 74 48.6
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.4e-15 87.0 48 89.6
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 4.1e-15 85.5 122 43.4
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 1.0e-13 80.9 110 45.5
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 5.0e-13 78.6 129 38.8
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 1.7e-08 63.5 86 44.2
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 1.4e-07 60.5 40 72.5
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 2.1e-06 56.6 60 53.3
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.5e-06 55.8 73 49.3
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 7.8e-06 54.7 50 58.0


User provided reference genes

Program Settings