Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 0.0e+00 1498.0 765 100.0
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 2.9e-95 354.0 649 40.5
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.3e-90 338.6 804 36.1
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 5.3e-89 333.2 828 34.8
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 4.5e-88 330.1 831 34.2
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 4.7e-85 320.1 827 33.6
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.0e-84 318.9 833 31.9
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 5.2e-84 316.6 827 33.9
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.2e-80 305.4 799 32.7
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 3.5e-80 303.9 824 34.3
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 2.5e-78 297.7 829 33.4
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 3.2e-78 297.4 747 33.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 4.2e-78 297.0 771 33.3
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 9.4e-78 295.8 802 33.5
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 2.7e-77 294.3 846 32.5
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.4e-76 292.0 801 32.8
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 3.0e-76 290.8 816 33.2
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 5.2e-76 290.0 787 31.8
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 6.8e-76 289.7 876 32.2
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.2e-75 288.9 877 31.7
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 7.5e-75 286.2 825 31.5
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 9.8e-75 285.8 829 33.1
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.1e-73 280.8 876 32.1
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 3.1e-73 280.8 812 31.5
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.2e-70 270.4 879 30.8
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.2e-70 269.6 830 32.8
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 9.5e-70 269.2 799 32.4
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.4e-68 265.4 778 31.6
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.8e-68 265.0 858 32.1
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.2e-67 262.3 852 30.8
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.7e-67 260.0 792 32.2
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 5.7e-67 260.0 799 29.5
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.2e-66 258.1 709 31.3
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 4.1e-65 253.8 815 29.3
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 5.4e-65 253.4 749 32.7
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.7e-64 251.1 822 31.3
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 7.8e-64 249.6 829 30.9
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.3e-63 248.1 794 29.8
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.3e-63 248.1 825 32.4
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 8.6e-63 246.1 848 30.1
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 1.2e-61 242.3 818 31.4
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.8e-61 241.1 798 32.3
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.8e-61 241.1 812 30.5
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.8e-60 238.4 806 31.1
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 2.3e-60 238.0 812 30.7
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 4.0e-60 237.3 810 29.6
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.2e-59 235.7 821 30.1
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 2.0e-59 235.0 784 28.6
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 2.2e-58 231.5 896 29.6
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 6.4e-58 229.9 881 28.7
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 3.2e-57 227.6 879 28.4
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 5.4e-57 226.9 586 34.0
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 9.2e-57 226.1 709 31.5
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 9.2e-57 226.1 809 28.7
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.6e-56 225.3 804 29.6
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 2.7e-56 224.6 870 30.0
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 5.9e-56 223.4 909 27.8
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 5.9e-56 223.4 795 27.7
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 5.9e-56 223.4 876 28.8
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 7.8e-56 223.0 855 29.6
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.0e-55 222.6 829 29.8
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 5.0e-55 220.3 790 29.4
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 8.6e-55 219.5 832 30.2
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 4.3e-54 217.2 899 29.0
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 9.5e-54 216.1 827 29.0
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 9.5e-54 216.1 817 28.4
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.6e-53 215.3 801 29.5
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 3.6e-53 214.2 894 27.2
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 4.7e-53 213.8 817 29.9
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 6.2e-53 213.4 801 28.5
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 8.0e-53 213.0 813 29.9
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.3e-52 211.5 765 28.8
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 5.2e-52 210.3 775 28.9
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.6e-51 208.0 953 26.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.4e-51 207.2 752 28.1
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 7.5e-51 206.5 903 27.0
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.7e-50 205.3 811 28.4
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 2.2e-50 204.9 799 28.3
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.4e-50 203.4 906 29.1
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 4.1e-49 200.7 170 64.1
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 7.0e-49 199.9 695 29.6
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 1.0e-47 196.1 604 31.8
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 7.3e-46 189.9 815 29.0
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 2.3e-44 184.9 770 27.4
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 6.8e-44 183.3 829 27.5
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.3e-42 179.1 207 49.3
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.1e-41 176.0 506 32.0
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.9e-41 175.3 841 26.6
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.7e-40 171.4 756 28.3
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 6.6e-39 166.8 802 27.8
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.1e-36 157.9 794 27.0
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 4.0e-36 157.5 167 53.3
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 4.9e-34 150.6 608 28.9
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 8.4e-34 149.8 832 24.9
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.9e-33 148.7 137 55.5
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 4.1e-33 147.5 635 28.2
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 6.0e-32 143.7 140 51.4
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.9e-31 141.0 637 28.4
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 8.6e-31 139.8 429 29.1
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.9e-30 138.7 559 30.1
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 3.6e-29 134.4 106 67.9
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 6.9e-28 130.2 568 26.9
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 2.4e-25 121.7 167 40.7
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 4.2e-25 120.9 147 46.9
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 4.2e-25 120.9 99 59.6
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 7.8e-24 116.7 360 31.9
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 2.5e-22 111.7 306 31.0
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 8.1e-21 106.7 687 24.7
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 4.0e-20 104.4 340 28.2
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 6.9e-20 103.6 230 32.6
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 1.2e-19 102.8 706 24.2
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 4.2e-17 94.4 602 25.9
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 4.6e-16 90.9 84 57.1
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.9e-14 85.5 413 26.6
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 6.2e-13 80.5 158 39.9
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 5.8e-11 73.9 80 46.2
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 1.3e-10 72.8 126 36.5
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.7e-10 72.4 126 42.9
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 2.2e-10 72.0 584 23.3
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 1.1e-09 69.7 150 26.7
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.2e-08 66.2 67 47.8
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 4.6e-08 64.3 172 26.7
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 1.5e-06 59.3 70 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 4.3e-06 57.8 168 26.8
unitig_52.g16899 Utricularia gibba HOM05D005434 ORTHO05D006412 4.3e-06 57.8 125 32.8


User provided reference genes

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