Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 1.7e-247 859.0 456 100.0
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 3.7e-130 469.2 422 59.5
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 5.2e-124 448.7 421 55.6
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.7e-122 443.7 435 54.7
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 6.3e-122 441.8 425 54.6
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 6.3e-122 441.8 425 54.6
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 1.6e-120 437.2 423 55.1
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 1.5e-118 430.6 421 55.6
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 2.1e-117 426.8 413 54.7
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 3.6e-117 426.0 416 57.9
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 6.1e-117 425.2 417 55.6
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.3e-116 423.3 414 57.0
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 8.9e-116 421.4 411 55.7
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 5.8e-115 418.7 435 52.9
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 5.8e-115 418.7 430 52.3
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.3e-114 417.5 414 56.0
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.4e-113 414.1 411 57.4
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.4e-113 414.1 422 54.5
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 2.4e-113 413.3 429 52.9
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 3.2e-113 412.9 412 54.4
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 4.1e-113 412.5 411 56.2
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 7.0e-113 411.8 428 53.0
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 9.2e-113 411.4 417 52.0
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 9.2e-113 411.4 472 50.2
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.0e-112 410.2 432 51.2
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 3.5e-112 409.5 432 53.2
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.7e-111 407.1 395 53.9
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 1.1e-110 404.4 425 51.3
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 5.6e-110 402.1 416 52.6
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 7.3e-110 401.7 441 50.8
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.8e-109 399.8 416 52.2
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 4.7e-109 399.1 421 51.3
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 6.2e-109 398.7 431 52.4
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 8.0e-109 398.3 444 52.0
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 1.8e-108 397.1 420 51.4
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 2.3e-108 396.7 412 52.4
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 6.8e-108 395.2 431 51.5
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 6.8e-108 395.2 422 49.5
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 2.6e-107 393.3 419 50.6
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 3.4e-107 392.9 410 52.9
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 3.4e-107 392.9 423 50.4
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 3.4e-107 392.9 420 50.7
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 7.5e-107 391.7 414 52.9
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.3e-106 391.0 374 52.7
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 6.4e-106 388.7 420 50.5
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 8.3e-106 388.3 431 52.4
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 4.1e-105 386.0 404 52.5
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 9.2e-105 384.8 418 50.7
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 1.2e-104 384.4 437 47.4
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 4.6e-104 382.5 442 49.1
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 6.0e-104 382.1 434 47.7
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 3.9e-103 379.4 411 50.1
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 1.5e-102 377.5 424 47.9
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 6.8e-100 368.6 378 52.4
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 8.9e-100 368.2 410 49.8
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.4e-99 366.3 433 47.6
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 4.4e-99 365.9 410 49.5
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 4.4e-99 365.9 421 49.9
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.7e-98 364.0 418 49.0
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 2.2e-98 363.6 428 48.4
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.9e-97 360.5 413 51.8
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.2e-96 357.8 415 47.2
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 7.8e-96 355.1 429 46.4
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 1.0e-95 354.8 418 47.6
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 1.3e-95 354.4 418 47.4
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.3e-95 353.6 421 47.5
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 6.6e-95 352.1 418 47.6
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.6e-95 352.1 433 46.9
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 6.6e-95 352.1 418 47.1
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 1.5e-94 350.9 410 48.3
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 4.3e-94 349.4 415 46.3
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 4.3e-94 349.4 433 47.8
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 7.3e-94 348.6 357 52.1
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 9.5e-94 348.2 417 48.2
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 9.5e-94 348.2 415 46.7
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 1.2e-93 347.8 388 48.7
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.2e-93 347.8 417 47.5
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 8.1e-93 345.1 447 45.4
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.1e-92 344.7 429 46.4
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 7.1e-89 332.0 421 46.1
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 2.3e-87 327.0 306 54.9
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 8.7e-87 325.1 419 46.1
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 2.5e-86 323.6 410 46.6
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.2e-85 321.2 331 52.0
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 4.2e-81 306.2 346 48.0
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 3.0e-79 300.1 443 42.7
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 2.5e-78 297.0 339 52.8
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 4.0e-76 289.7 376 43.4
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.2e-74 283.9 279 54.1
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.1e-73 281.6 311 52.4
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 3.1e-68 263.5 375 38.4
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.5e-67 261.2 416 39.2
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 1.5e-67 261.2 327 48.0
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 2.1e-64 250.8 406 37.9
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.3e-63 247.3 379 37.5
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 4.8e-61 239.6 433 35.8
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 2.7e-56 223.8 410 36.1
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 9.7e-54 215.3 233 48.9
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 3.4e-51 206.8 205 53.7
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 1.4e-47 194.9 208 54.8
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.8e-47 194.5 213 48.8
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 6.3e-37 159.5 216 45.8
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.5e-25 120.9 83 68.7
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.1e-20 103.6 108 48.1
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 2.5e-17 94.4 332 26.8
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.0e-15 87.4 62 59.7
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.7e-13 81.6 55 65.5
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.1e-12 77.4 62 54.8
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 4.0e-07 60.5 134 33.6
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 6.8e-07 59.7 97 38.1
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.2e-06 58.9 97 45.4


User provided reference genes

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