Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g21730 Coffea canephora HOM05D005784 ORTHO05D007803 6.4e-99 364.0 174 100.0
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 2.4e-82 308.9 170 83.5
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 3.2e-82 308.5 170 82.9
CAN.G179.27 Capsicum annuum HOM05D005784 ORTHO05D007803 4.6e-81 304.7 169 82.8
Nitab4.5_0008825g0010 Nicotiana tabacum HOM05D005784 ORTHO05D007803 6.0e-81 304.3 170 82.4
Thecc.01G327300 Theobroma cacao HOM05D005784 ORTHO05D007803 6.0e-81 304.3 163 86.5
Gohir.D11G110800 Gossypium hirsutum HOM05D005784 ORTHO05D007803 1.3e-80 303.1 171 83.0
Gorai.007G118500 Gossypium raimondii HOM05D005784 ORTHO05D007803 1.3e-80 303.1 171 83.0
Prupe.3G001200 Prunus persica HOM05D005784 ORTHO05D007803 1.3e-80 303.1 169 83.4
Duzib133G0630 Durio zibethinus HOM05D005784 ORTHO05D007803 2.3e-80 302.4 163 85.3
Gohir.A11G105900 Gossypium hirsutum HOM05D005784 ORTHO05D007803 6.7e-80 300.8 159 86.8
Dinv12073 Davidia involucrata HOM05D005784 ORTHO05D007803 1.5e-79 299.7 171 81.3
Actinidia25875 Actinidia chinensis HOM05D005784 ORTHO05D007803 1.9e-79 299.3 174 81.6
Oeu052593.2 Olea europaea HOM05D005784 ORTHO05D007803 1.9e-79 299.3 169 82.2
Atru.chr5.839 Acer truncatum HOM05D005784 ORTHO05D007803 2.5e-79 298.9 171 79.5
CANSAT25G3716 Cannabis sativa HOM05D005784 ORTHO05D007803 3.3e-79 298.5 171 79.5
MD09G1291600 Malus domestica HOM05D005784 ORTHO05D007803 4.3e-79 298.1 169 82.2
FvH4_1g26110 Fragaria vesca HOM05D005784 ORTHO05D007803 7.4e-79 297.4 169 80.5
Nitab4.5_0003092g0090 Nicotiana tabacum HOM05D005784 ORTHO05D007803 7.4e-79 297.4 170 80.6
Aqoxy5G02861 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 9.6e-79 297.0 171 79.5
Rhsim01G0293700 Rhododendron simsii HOM05D005784 ORTHO05D007803 2.8e-78 295.4 173 79.2
Ciclev10019335m.g Citrus clementina HOM05D005784 ORTHO05D007803 3.7e-78 295.0 171 80.1
Peaxi162Scf00309g00620 Petunia axillaris HOM05D005784 ORTHO05D007803 4.8e-78 294.7 167 82.0
RcHm_v2.0_Chr3g0485611 Rosa chinensis HOM05D005784 ORTHO05D007803 4.8e-78 294.7 169 79.9
EL10Ac1g01825 Beta vulgaris HOM05D005784 ORTHO05D007803 8.2e-78 293.9 164 79.9
Migut.D00007 Erythranthe guttata HOM05D005784 ORTHO05D007803 8.2e-78 293.9 162 84.6
QL09p037402 Quercus lobata HOM05D005784 ORTHO05D007803 8.2e-78 293.9 169 79.3
MSTRG.18053 Avicennia marina HOM05D005784 ORTHO05D007803 1.1e-77 293.5 171 80.1
Eucgr.A00993 Eucalyptus grandis HOM05D005784 ORTHO05D007803 1.1e-77 293.5 163 82.2
FAN19G2824 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.1e-77 293.5 167 80.2
Lalb_Chr02g0147261 Lupinus albus HOM05D005784 ORTHO05D007803 1.1e-77 293.5 171 78.9
Manes.05G007100 Manihot esculenta HOM05D005784 ORTHO05D007803 1.8e-77 292.7 170 78.8
Migut.N00893 Erythranthe guttata HOM05D005784 ORTHO05D007803 2.4e-77 292.4 162 84.0
Nn4g25319 Nelumbo nucifera HOM05D005784 ORTHO05D007803 2.4e-77 292.4 164 82.3
Potri.002G185400 Populus trichocarpa HOM05D005784 ORTHO05D007803 3.1e-77 292.0 171 78.4
Glyma.10G139300 Glycine max HOM05D005784 ORTHO05D007803 4.0e-77 291.6 171 79.5
Cfa004924 Carpinus fangiana HOM05D000351 ORTHO05D007803 5.3e-77 291.2 159 84.3
DCAR_002944 Daucus carota HOM05D005784 ORTHO05D007803 5.3e-77 291.2 164 82.9
FAN26G2096 Fragaria x ananassa HOM05D005784 ORTHO05D007803 5.3e-77 291.2 168 79.8
GSVIVG01028229001 Vitis vinifera HOM05D005784 ORTHO05D007803 9.0e-77 290.4 171 77.2
TPR.G3030 Trifolium pratense HOM05D005784 ORTHO05D007803 1.2e-76 290.0 171 77.8
CSS0010584 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D007803 1.5e-76 289.7 164 82.9
TAR362G0637 Trochodendron aralioides HOM05D005784 ORTHO05D007803 1.5e-76 289.7 171 78.4
TAR362G1337 Trochodendron aralioides HOM05D005784 ORTHO05D007803 2.0e-76 289.3 171 78.4
AUR62043318 Chenopodium quinoa HOM05D005784 ORTHO05D007803 2.6e-76 288.9 171 76.6
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 2.6e-76 288.9 167 79.6
Lj1C6G5 Lonicera japonica HOM05D005784 ORTHO05D007803 2.6e-76 288.9 157 84.7
Lalb_Chr06g0167151 Lupinus albus HOM05D005784 ORTHO05D007803 2.6e-76 288.9 171 78.4
Medtr1g085610 Medicago truncatula HOM05D005784 ORTHO05D007803 2.6e-76 288.9 170 77.6
FAN23G2435 Fragaria x ananassa HOM05D005784 ORTHO05D007803 3.4e-76 288.5 167 79.6
MBI18_g03858_MAGBIO Magnolia biondii HOM05D005784 ORTHO05D007803 4.5e-76 288.1 167 79.6
Aqoxy2G02413 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 5.8e-76 287.7 164 79.9
arahy.Tifrunner.gnm1.ann1.AZ9DWX Arachis hypogaea HOM05D005784 ORTHO05D007803 5.8e-76 287.7 171 77.8
Phvul.007G208100 Phaseolus vulgaris HOM05D005784 ORTHO05D007803 7.6e-76 287.3 171 78.4
AUR62035184 Chenopodium quinoa HOM05D005784 ORTHO05D007803 1.0e-75 287.0 171 77.2
Glyma.02G006500 Glycine max HOM05D005784 ORTHO05D007803 1.3e-75 286.6 171 77.8
Sc05g0000040 Simmondsia chinensis HOM05D005784 ORTHO05D007803 1.3e-75 286.6 172 75.0
Psat6g157920 Pisum sativum HOM05D005784 ORTHO05D007803 2.9e-75 285.4 171 76.0
ATR0693G326 Amborella trichopoda HOM05D005784 ORTHO05D007803 4.9e-75 284.6 162 80.9
COL.COLO4_23104 Corchorus olitorius HOM05D005784 ORTHO05D007803 4.9e-75 284.6 161 81.4
TWI59G1466 Tripterygium wilfordii HOM05D005784 ORTHO05D007803 6.5e-75 284.3 164 78.7
Sed0007139 Sechium edule HOM05D005784 ORTHO05D007803 8.4e-75 283.9 163 77.9
Ca_10232_v3 Cicer arietinum L. HOM05D005784 ORTHO05D007803 1.1e-74 283.5 171 76.0
ClCG11G000360 Citrullus lanatus HOM05D005784 ORTHO05D007803 1.1e-74 283.5 156 82.1
PGR042G0128 Punica granatum HOM05D005784 ORTHO05D007803 1.1e-74 283.5 159 81.8
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 1.1e-74 283.5 171 75.4
CiPaw.08G082400 Carya illinoinensis HOM05D005784 ORTHO05D007803 1.9e-74 282.7 159 79.2
Aa31LG5G1370 Aethionema arabicum HOM05D005784 ORTHO05D007803 3.2e-74 282.0 170 75.3
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 7.1e-74 280.8 171 74.9
Cpa.g.sc57.39 Carica papaya HOM05D005784 ORTHO05D007803 9.3e-74 280.4 161 81.4
CDE09G0629 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 9.3e-74 280.4 167 77.8
MELO3C026475.2 Cucumis melo HOM05D005784 ORTHO05D007803 9.3e-74 280.4 163 78.5
Lj5g0003944 Lotus japonicus HOM05D005784 ORTHO05D007803 9.3e-74 280.4 171 76.0
CsaV3_5G036980 Cucumis sativus L. HOM05D005784 ORTHO05D007803 1.2e-73 280.0 163 79.1
BolC9t53062H Brassica oleracea HOM05D005784 ORTHO05D007803 2.1e-73 279.3 170 75.9
Thhalv10028510m.g Eutrema salsugineum HOM05D005784 ORTHO05D007803 2.1e-73 279.3 172 76.7
SGA_v2.0_scaffold417G51242 Striga asiatica HOM05D005784 ORTHO05D007803 2.1e-73 279.3 157 82.8
VMungo0720G0010 Vigna mungo HOM05D005784 ORTHO05D007803 2.1e-73 279.3 163 78.5
THA.LOC104815912 Tarenaya hassleriana HOM05D005784 ORTHO05D007803 2.7e-73 278.9 172 75.0
BcaC04g24079 Brassica carinata HOM05D005784 ORTHO05D007803 4.6e-73 278.1 170 75.3
C09p01280 Brassica napus HOM05D005784 ORTHO05D007803 4.6e-73 278.1 170 75.3
AT4G01660 Arabidopsis thaliana HOM05D005784 ORTHO05D007803 6.0e-73 277.7 172 76.2
BcaB01g02124 Brassica carinata HOM05D005784 ORTHO05D007803 7.9e-73 277.3 164 78.0
A09p01190 Brassica napus HOM05D005784 ORTHO05D007803 7.9e-73 277.3 158 81.0
BraA09t35789Z Brassica rapa HOM05D005784 ORTHO05D007803 7.9e-73 277.3 158 81.0
HanXRQChr06g0167951 Helianthus annuus HOM05D005784 ORTHO05D007803 7.9e-73 277.3 158 79.7
AL6G51690 Arabidopsis lyrata HOM05D005784 ORTHO05D007803 1.3e-72 276.6 158 81.0
DCAR_005710 Daucus carota HOM05D005784 ORTHO05D007803 1.8e-72 276.2 164 79.9
Lsat_1_v5_gn_8_167141 Lactuca sativa HOM05D005784 ORTHO05D007803 8.7e-72 273.9 160 80.0
Sp6g01550 Schrenkiella parvula HOM05D005784 ORTHO05D007803 1.1e-71 273.5 168 75.0
Os01g0318700 Oryza sativa ssp. japonica HOM05D005784 ORTHO05D007803 1.5e-71 273.1 167 73.7
PSO357G0013 Papaver somniferum HOM05D005784 ORTHO05D007803 3.3e-71 271.9 163 74.2
Zm00001eb340520 Zea mays HOM05D005784 ORTHO05D007803 3.3e-71 271.9 170 72.9
Carub.0006s3555 Capsella rubella HOM05D005784 ORTHO05D007803 4.3e-71 271.6 164 76.2
SHI19975 Sapria himalayana HOM05D005784 ORTHO05D000023 9.7e-71 270.4 159 78.0
PSO170G5067 Papaver somniferum HOM05D005784 ORTHO05D007803 1.6e-70 269.6 163 73.6
AagrBONN_evm.TU.Sc2ySwM_228.4566 Anthoceros agrestis HOM05D005784 ORTHO05D007803 4.5e-68 261.5 164 73.2
CARHR250010 Cardamine hirsuta HOM05D005784 ORTHO05D007803 4.5e-68 261.5 164 72.6
SEGI_33686 Sequoiadendron giganteum HOM05D005784 ORTHO05D007803 4.5e-68 261.5 164 70.7
SMO146G0128 Selaginella moellendorffii HOM05D005784 ORTHO05D007803 2.1e-65 252.7 156 73.7
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.9e-63 246.1 142 77.5
Mapoly0064s0089 Marchantia polymorpha HOM05D005784 ORTHO05D007803 3.3e-63 245.4 165 68.5
CBR_g37217 Chara braunii HOM05D005784 ORTHO05D007803 1.6e-57 226.5 145 69.7
Cre10.g429800 Chlamydomonas reinhardtii HOM05D005784 ORTHO05D007803 3.0e-56 222.2 154 65.6
Duzib138G0454 Durio zibethinus HOM05D005784 ORTHO05D007803 5.1e-56 221.5 122 83.6
Hma1.2p1_0484F.1_g163010 Hydrangea macrophylla HOM05D005784 ORTHO05D007803 1.3e-54 216.9 130 79.2
MCO09G446 Micromonas commoda HOM05D005784 ORTHO05D007803 3.7e-54 215.3 160 60.6
CDE09G1383 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 1.3e-51 206.8 127 75.6
vmacro15093 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 2.2e-51 206.1 126 76.2
PRCOL_00004655 Prasinoderma coloniale HOM05D005784 ORTHO05D007803 9.4e-50 200.7 155 59.4
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 5.3e-45 184.9 107 78.5
Haze_26301 Corylus avellana HOM05D005784 ORTHO05D007803 6.3e-38 161.4 159 49.7
Cfa022580 Carpinus fangiana HOM05D005784 ORTHO05D007803 4.1e-37 158.7 155 48.4
Glyma.03G124801 Glycine max HOM05D005784 ORTHO05D004556 1.1e-10 70.9 42 71.4
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 8.0e-09 64.7 52 63.5


User provided reference genes

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