Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 9.5e-127 456.8 228 100.0
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 6.8e-48 194.9 230 50.9
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 8.8e-48 194.5 228 52.2
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 9.8e-47 191.0 222 50.9
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 1.3e-46 190.7 222 50.0
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 1.4e-45 187.2 222 50.5
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 5.9e-44 181.8 226 48.7
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 7.7e-44 181.4 228 48.7
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 7.7e-44 181.4 228 48.7
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 5.0e-43 178.7 224 50.0
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 8.5e-43 177.9 221 52.5
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 1.5e-42 177.2 228 50.4
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 5.5e-42 175.3 226 50.9
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 2.7e-41 172.9 230 47.4
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 3.6e-41 172.6 233 48.5
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 2.3e-40 169.9 216 46.8
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 8.8e-40 167.9 232 48.3
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 8.8e-40 167.9 229 47.2
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 1.2e-39 167.5 233 44.6
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 2.6e-39 166.4 230 47.4
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 3.4e-39 166.0 230 47.8
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 5.7e-39 165.2 230 45.2
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 1.3e-38 164.1 230 46.5
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 2.2e-38 163.3 218 48.6
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 1.1e-37 161.0 229 46.3
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 1.4e-37 160.6 227 47.6
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 1.4e-37 160.6 218 46.3
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 3.1e-37 159.5 226 45.1
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 4.1e-37 159.1 230 44.3
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 4.1e-37 159.1 230 44.3
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 5.4e-37 158.7 221 45.7
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 5.4e-37 158.7 227 44.9
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 7.0e-37 158.3 226 44.7
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 7.0e-37 158.3 220 42.3
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 7.0e-37 158.3 234 43.6
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.2e-36 157.5 228 46.5
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 2.0e-36 156.8 232 45.7
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.0e-36 156.8 226 44.2
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 2.0e-36 156.8 226 44.2
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.0e-36 156.8 226 44.2
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 2.0e-36 156.8 228 45.6
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 3.5e-36 156.0 231 44.2
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 4.5e-36 155.6 226 43.4
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 1.0e-35 154.5 228 45.2
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 3.8e-35 152.5 230 46.5
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 5.0e-35 152.1 229 44.5
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 8.6e-35 151.4 226 43.8
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 1.9e-34 150.2 208 47.1
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.9e-34 150.2 220 45.0
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 1.9e-34 150.2 226 41.6
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 3.3e-34 149.4 231 43.7
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.3e-34 149.4 220 45.0
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 3.3e-34 149.4 227 42.3
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 3.3e-34 149.4 227 39.6
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.2e-34 149.1 220 45.0
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 5.5e-34 148.7 228 45.2
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 5.5e-34 148.7 235 41.3
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 1.6e-33 147.1 227 41.4
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 1.6e-33 147.1 228 43.9
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 2.1e-33 146.7 227 40.5
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 2.8e-33 146.4 228 42.5
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 3.6e-33 146.0 231 41.1
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.6e-33 146.0 233 42.9
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.6e-33 146.0 233 42.9
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 4.7e-33 145.6 233 45.5
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 8.0e-33 144.8 231 43.7
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.0e-32 144.4 228 40.8
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 1.0e-32 144.4 228 40.8
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 1.0e-32 144.4 208 44.7
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 1.0e-32 144.4 231 42.4
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 1.0e-32 144.4 232 46.6
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 1.8e-32 143.7 226 41.2
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 4.0e-32 142.5 227 40.5
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 5.2e-32 142.1 219 46.1
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 1.2e-31 141.0 213 41.3
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 2.6e-31 139.8 227 43.6
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 4.4e-31 139.0 230 40.9
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 7.5e-31 138.3 227 43.6
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 1.3e-30 137.5 207 45.9
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 1.3e-30 137.5 225 42.2
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 1.3e-30 137.5 228 39.5
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 3.7e-30 136.0 212 43.4
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 3.7e-30 136.0 213 39.9
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 6.3e-30 135.2 232 39.7
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 6.3e-30 135.2 227 41.4
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.4e-29 134.0 233 41.2
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 1.8e-29 133.7 227 37.9
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 5.4e-29 132.1 227 39.6
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 5.4e-29 132.1 226 39.4
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 1.2e-28 131.0 229 40.2
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 2.7e-28 129.8 227 41.9
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 4.6e-28 129.0 227 38.8
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 4.6e-28 129.0 227 38.3
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 7.8e-28 128.3 227 36.6
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.0e-27 127.9 214 44.4
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.0e-27 127.9 228 39.9
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 2.9e-27 126.3 221 37.6
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 5.0e-27 125.6 218 38.5
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.1e-26 124.4 198 45.5
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.1e-26 124.4 198 45.5
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.5e-26 124.0 213 42.3
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.2e-22 110.2 214 39.7
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.2e-22 110.2 214 39.7
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 3.7e-22 109.4 214 38.8
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 1.1e-21 107.8 234 36.3
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 2.0e-20 103.6 240 33.3
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 3.3e-18 96.3 244 32.8
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 4.3e-18 95.9 242 33.9
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 4.3e-18 95.9 244 32.8
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 4.3e-18 95.9 244 32.8
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 4.3e-18 95.9 236 33.9
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 8.1e-17 91.7 244 32.0
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 1.4e-16 90.9 250 33.2
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 1.8e-16 90.5 243 31.7
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 5.2e-16 89.0 249 31.3
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 2.0e-15 87.0 128 42.2
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 3.4e-15 86.3 232 32.3
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 9.8e-15 84.7 244 32.8
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 1.3e-14 84.3 243 31.3
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 2.2e-14 83.6 258 31.4
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 6.4e-14 82.0 173 38.2
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 4.1e-13 79.3 233 31.8
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 3.5e-12 76.3 246 31.3
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 1.7e-11 73.9 229 30.1
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 1.1e-10 71.2 241 28.6
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 2.5e-10 70.1 108 40.7
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 5.2e-08 62.4 126 36.5
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 2.0e-07 60.5 119 33.6
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 7.6e-07 58.5 123 34.1
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 1.3e-06 57.8 115 35.7
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 1.7e-06 57.4 87 41.4
MBI10_g37756_MAGBIO Magnolia biondii HOM05D001935 ORTHO05D001700 2.2e-06 57.0 96 37.5
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 2.9e-06 56.6 220 28.6
Thecc.03G058400 Theobroma cacao HOM05D007478 ORTHO05D001700 2.9e-06 56.6 128 33.6
PGR042G0803 Punica granatum HOM05D001935 ORTHO05D001700 4.9e-06 55.8 105 40.0
Lalb_Chr05g0221601 Lupinus albus HOM05D007478 ORTHO05D001700 6.4e-06 55.5 113 36.3
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 8.4e-06 55.1 220 25.5


User provided reference genes

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