Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 4.0e-142 508.1 256 100.0
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 7.6e-56 221.5 254 54.3
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.0e-52 211.1 266 51.5
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.3e-52 210.7 257 51.0
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 3.0e-52 209.5 255 51.8
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 1.5e-51 207.2 255 50.6
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.8e-49 200.3 206 54.9
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 9.0e-49 198.0 255 51.0
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 2.9e-47 193.0 270 46.7
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 4.2e-46 189.1 270 47.8
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 5.4e-46 188.7 264 46.2
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 2.7e-45 186.4 277 46.2
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 3.0e-44 183.0 264 46.2
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 6.6e-44 181.8 258 44.6
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 6.6e-44 181.8 247 45.7
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 6.6e-44 181.8 252 49.6
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 1.9e-43 180.3 189 51.9
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 2.5e-43 179.9 286 44.4
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 2.1e-42 176.8 215 51.2
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 2.1e-42 176.8 215 51.6
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 1.8e-41 173.7 214 47.2
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 4.0e-41 172.6 265 45.3
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.2e-40 171.0 259 44.4
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 9.9e-40 167.9 269 43.5
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 9.9e-40 167.9 266 44.0
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 1.7e-39 167.2 219 46.6
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 2.2e-39 166.8 236 44.1
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 2.9e-39 166.4 261 44.8
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 3.8e-39 166.0 261 44.8
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 4.9e-39 165.6 222 47.7
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 6.4e-39 165.2 261 45.2
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 1.1e-38 164.5 194 49.0
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 1.9e-38 163.7 260 43.5
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 1.9e-38 163.7 269 45.0
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 3.2e-38 162.9 261 44.4
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 7.1e-38 161.8 273 45.1
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 7.1e-38 161.8 252 42.5
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 1.2e-37 161.0 214 44.9
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 1.2e-37 161.0 259 42.9
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 1.6e-37 160.6 224 46.9
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 1.6e-37 160.6 160 55.6
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 7.9e-37 158.3 228 44.7
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 7.9e-37 158.3 255 43.5
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 7.9e-37 158.3 250 44.0
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 2.3e-36 156.8 255 46.7
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.3e-36 156.8 254 42.1
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 2.3e-36 156.8 251 41.0
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 3.0e-36 156.4 233 45.5
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 5.1e-36 155.6 255 41.6
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 5.1e-36 155.6 259 44.0
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 5.1e-36 155.6 234 43.6
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 6.7e-36 155.2 255 43.1
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 6.7e-36 155.2 256 39.8
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 8.7e-36 154.8 254 40.6
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 1.5e-35 154.1 234 43.6
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.5e-35 154.1 267 41.9
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.5e-35 154.1 267 41.9
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 2.5e-35 153.3 216 45.8
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 9.6e-35 151.4 254 40.9
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 9.6e-35 151.4 272 43.0
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 1.3e-34 151.0 252 40.5
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 2.8e-34 149.8 200 49.5
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 2.8e-34 149.8 224 43.3
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 6.2e-34 148.7 259 42.5
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 8.1e-34 148.3 272 42.6
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 5.3e-33 145.6 174 46.6
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 9.0e-33 144.8 260 41.2
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 2.0e-32 143.7 260 41.2
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 2.0e-32 143.7 234 42.3
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 5.8e-32 142.1 260 40.8
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 2.9e-31 139.8 265 37.4
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 1.1e-30 137.9 210 43.3
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 5.5e-30 135.6 137 54.0
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 7.1e-30 135.2 259 37.1
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 9.3e-30 134.8 260 39.2
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 1.8e-28 130.6 157 49.7
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 1.1e-27 127.9 256 40.6
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 4.3e-27 125.9 252 38.5
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 2.8e-26 123.2 254 37.4
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 5.3e-25 119.0 187 40.1
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.0e-23 114.8 119 51.3
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 6.0e-21 105.5 229 38.0
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 2.5e-19 100.1 77 64.9
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 6.3e-18 95.5 115 42.6
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 9.7e-11 71.6 79 54.4
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 8.2e-10 68.6 50 64.0
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 2.6e-08 63.5 249 27.7
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 4.5e-08 62.8 154 37.0
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 5.0e-07 59.3 76 42.1


User provided reference genes

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