Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 2.3e-70 268.9 141 100.0
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 2.8e-52 208.8 143 78.3
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 4.8e-52 208.0 143 79.0
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 4.8e-52 208.0 143 75.5
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 8.1e-52 207.2 143 76.9
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.8e-51 206.1 143 79.0
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.8e-51 206.1 143 79.0
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 1.8e-51 206.1 142 77.5
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 1.5e-50 203.0 142 77.5
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 1.5e-50 203.0 143 77.6
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.4e-50 201.8 133 79.7
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 4.5e-50 201.4 145 75.2
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 4.5e-50 201.4 141 77.3
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 7.6e-50 200.7 141 76.6
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.3e-49 199.9 143 74.1
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.3e-49 199.9 141 77.3
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 2.2e-49 199.1 136 77.2
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 2.2e-49 199.1 141 74.5
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 2.9e-49 198.7 143 75.5
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 3.8e-49 198.4 143 73.4
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 3.8e-49 198.4 147 74.1
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 4.9e-49 198.0 141 75.9
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 6.4e-49 197.6 143 76.2
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 8.4e-49 197.2 141 75.9
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 8.4e-49 197.2 142 73.9
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 8.4e-49 197.2 136 77.9
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 1.1e-48 196.8 145 73.8
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 1.1e-48 196.8 145 73.8
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 1.1e-48 196.8 143 74.1
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 1.1e-48 196.8 143 74.1
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 3.2e-48 195.3 141 73.8
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 3.2e-48 195.3 150 72.7
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 7.1e-48 194.1 141 73.8
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 9.3e-48 193.7 143 72.7
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 1.2e-47 193.4 143 74.1
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 2.7e-47 192.2 141 74.5
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 3.5e-47 191.8 141 75.9
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 4.6e-47 191.4 139 75.5
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 4.6e-47 191.4 138 74.6
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 6.0e-47 191.0 142 71.8
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 6.0e-47 191.0 143 74.1
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.0e-47 191.0 141 73.0
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 1.3e-46 189.9 143 74.8
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 1.3e-46 189.9 141 73.8
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.8e-46 189.5 141 72.3
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 2.3e-46 189.1 141 73.8
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 3.0e-46 188.7 141 72.3
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 3.0e-46 188.7 141 72.3
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 3.9e-46 188.3 143 72.0
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 5.1e-46 188.0 141 73.8
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.7e-46 187.6 141 71.6
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 8.7e-46 187.2 133 73.7
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 8.7e-46 187.2 141 73.0
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 1.1e-45 186.8 145 70.3
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 1.1e-45 186.8 145 70.3
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 1.1e-45 186.8 155 68.4
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 2.5e-45 185.7 141 70.9
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 2.5e-45 185.7 120 81.7
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.5e-45 185.7 138 73.2
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.3e-45 185.3 141 70.2
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 3.3e-45 185.3 110 87.3
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 4.3e-45 184.9 116 82.8
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 4.3e-45 184.9 168 63.7
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 5.6e-45 184.5 133 74.4
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 5.6e-45 184.5 142 71.8
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 5.6e-45 184.5 142 71.8
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 7.4e-45 184.1 146 69.9
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 9.6e-45 183.7 134 73.1
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 9.6e-45 183.7 159 67.3
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 9.6e-45 183.7 137 73.7
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 1.3e-44 183.3 143 70.6
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 1.3e-44 183.3 148 70.9
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 1.3e-44 183.3 141 70.9
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.3e-44 183.3 118 80.5
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.6e-44 183.0 147 69.4
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 2.1e-44 182.6 141 70.9
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 2.8e-44 182.2 146 65.8
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.8e-44 182.2 141 70.2
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 3.7e-44 181.8 146 69.2
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 4.8e-44 181.4 135 73.3
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 4.8e-44 181.4 160 65.6
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 6.2e-44 181.0 141 70.9
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 8.1e-44 180.6 142 70.4
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 1.1e-43 180.3 129 72.9
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.4e-43 179.9 141 70.2
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 2.4e-43 179.1 146 68.5
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 9.0e-43 177.2 141 68.1
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.0e-42 176.0 141 70.2
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 2.6e-42 175.6 146 65.8
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.4e-42 175.3 125 72.0
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 5.8e-42 174.5 125 71.2
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 5.8e-42 174.5 143 67.1
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.6e-42 174.1 125 71.2
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 4.2e-40 168.3 138 68.8
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 7.1e-40 167.5 141 66.0
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 9.3e-40 167.2 150 61.3
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.0e-38 163.7 119 72.3
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.8e-36 154.8 151 61.6
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 2.4e-35 152.5 118 69.5
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 3.4e-34 148.7 130 66.9
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 5.5e-32 141.4 118 64.4
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 1.6e-31 139.8 117 60.7
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 2.7e-31 139.0 151 57.6
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 4.6e-31 138.3 104 74.0
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 7.9e-31 137.5 87 80.5
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 7.9e-31 137.5 119 64.7
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 7.9e-31 137.5 119 63.9
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 1.8e-30 136.3 142 57.7
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.8e-30 136.3 83 84.3
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 3.0e-30 135.6 119 63.9
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 3.0e-30 135.6 119 63.9
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 3.0e-30 135.6 119 63.9
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 5.1e-30 134.8 119 63.0
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 5.1e-30 134.8 119 63.0
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 6.7e-30 134.4 121 60.3
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.1e-29 133.7 107 68.2
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 1.5e-29 133.3 131 57.3
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.6e-28 129.8 150 52.0
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 3.7e-28 128.6 77 85.7
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 6.3e-28 127.9 83 79.5
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 4.1e-27 125.2 89 77.5
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 7.7e-26 120.9 80 78.8
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.7e-25 119.8 85 71.8
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 7.2e-24 114.4 126 51.6
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 1.2e-23 113.6 163 45.4
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 2.1e-23 112.8 94 63.8
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.0e-21 106.3 138 46.4
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 3.3e-21 105.5 73 76.7
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 1.6e-15 86.7 111 47.7
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 1.4e-14 83.6 91 53.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.8e-11 73.2 70 60.0
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 9.1e-11 70.9 85 50.6
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.7e-10 67.8 43 79.1
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 2.2e-09 66.2 84 47.6
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.6e-07 58.9 33 81.8
CBR_g10859 Chara braunii HOM05D005449 ORTHO05D006916 3.0e-06 55.8 101 34.7


User provided reference genes

Program Settings