Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 1.6e-180 636.0 318 100.0
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 4.8e-92 342.0 292 58.6
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 4.8e-92 342.0 323 56.0
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.7e-89 333.6 310 54.8
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 2.4e-88 329.7 286 57.7
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 9.3e-88 327.8 312 53.8
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.2e-87 327.4 311 52.7
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 2.7e-87 326.2 318 55.3
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 3.5e-87 325.9 313 54.3
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 3.5e-87 325.9 310 55.2
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 4.6e-87 325.5 257 59.9
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 7.9e-87 324.7 310 53.2
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 1.0e-86 324.3 337 52.8
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 1.0e-86 324.3 292 55.1
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 3.9e-86 322.4 310 54.2
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 5.1e-86 322.0 311 53.4
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 6.7e-86 321.6 347 49.6
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 1.1e-85 320.9 311 53.1
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.1e-85 320.9 311 53.1
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.1e-85 320.9 324 51.5
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 2.5e-85 319.7 310 52.9
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 4.3e-85 318.9 284 57.0
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 4.3e-85 318.9 313 52.4
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 5.6e-85 318.5 287 56.8
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 7.4e-85 318.2 291 56.4
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 9.6e-85 317.8 257 56.8
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.3e-84 317.4 290 54.5
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.1e-84 316.6 290 54.5
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 2.8e-84 316.2 305 52.5
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.7e-84 315.8 304 53.0
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 3.7e-84 315.8 319 52.7
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.8e-84 315.5 290 54.5
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 4.8e-84 315.5 321 52.0
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 1.1e-83 314.3 295 52.5
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 1.8e-83 313.5 322 50.3
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 3.1e-83 312.8 289 53.6
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 5.3e-83 312.0 312 51.9
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 5.3e-83 312.0 360 46.9
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 6.9e-83 311.6 322 50.0
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 9.0e-83 311.2 326 52.1
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 9.0e-83 311.2 284 56.0
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 1.2e-82 310.8 315 50.8
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 1.5e-82 310.5 345 48.7
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 2.0e-82 310.1 228 62.7
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.6e-82 309.7 322 49.7
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 3.4e-82 309.3 264 57.6
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 7.6e-82 308.1 296 52.7
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.7e-81 307.0 316 51.9
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 2.5e-80 303.1 324 50.9
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 5.5e-80 302.0 285 55.4
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 7.1e-80 301.6 285 51.2
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 9.3e-80 301.2 228 61.8
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 1.2e-79 300.8 297 53.2
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 2.1e-79 300.1 278 54.0
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 2.7e-79 299.7 300 49.3
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 2.7e-79 299.7 285 54.0
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 4.6e-79 298.9 258 57.0
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 7.9e-79 298.1 287 52.6
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.3e-78 297.4 301 52.5
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 3.9e-78 295.8 283 50.9
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 3.9e-78 295.8 292 50.3
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 5.1e-78 295.4 324 50.9
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 6.7e-78 295.0 313 49.2
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.5e-77 293.9 301 52.2
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 1.9e-77 293.5 300 48.3
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 2.5e-77 293.1 310 48.1
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 3.3e-77 292.7 291 50.5
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 9.7e-77 291.2 302 52.0
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 1.6e-76 290.4 304 50.0
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 4.8e-76 288.9 286 52.8
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 8.2e-76 288.1 321 49.2
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 1.1e-75 287.7 264 53.8
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 1.4e-75 287.3 325 48.6
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 5.3e-75 285.4 331 48.0
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 5.3e-75 285.4 331 48.0
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 1.5e-74 283.9 288 51.0
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 1.5e-74 283.9 289 51.9
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 3.4e-74 282.7 334 48.2
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 3.4e-74 282.7 333 46.8
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 5.9e-74 282.0 292 51.0
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 2.2e-73 280.0 269 48.7
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 2.9e-73 279.6 264 53.4
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 3.8e-73 279.3 333 45.9
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 8.5e-73 278.1 314 47.5
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 2.1e-71 273.5 288 49.7
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 6.1e-71 271.9 287 49.8
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 1.8e-70 270.4 288 49.0
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 2.3e-70 270.0 288 49.3
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 5.7e-69 265.4 252 52.8
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 4.8e-68 262.3 285 45.6
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 4.1e-67 259.2 209 57.9
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 2.5e-64 250.0 301 46.2
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 3.3e-61 239.6 291 43.3
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 1.8e-59 233.8 268 47.8
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 1.5e-58 230.7 269 44.2
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 8.3e-44 181.8 217 44.7
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 3.2e-40 169.9 145 54.5
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 3.2e-40 169.9 332 35.5
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 3.6e-39 166.4 141 61.0
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 1.5e-32 144.4 160 52.5
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 1.4e-30 137.9 120 58.3
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 4.4e-29 132.9 123 52.0
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 6.6e-25 119.0 236 30.1
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 8.6e-25 118.6 259 32.8
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 9.8e-21 105.1 116 44.8
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 1.2e-18 98.2 138 39.1
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 1.3e-17 94.7 86 52.3
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 3.9e-17 93.2 86 51.2
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 2.1e-15 87.4 86 50.0
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 1.2e-10 71.6 141 28.4
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 1.0e-09 68.6 72 47.2
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 1.7e-09 67.8 68 55.9
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 6.6e-09 65.9 99 41.4
Cre09.g387282 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 1.6e-07 61.2 88 38.6
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 8.9e-06 55.5 54 51.9


User provided reference genes

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