Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 4.3e-68 261.2 129 100.0
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 1.3e-43 179.9 127 66.1
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 2.8e-43 178.7 127 66.1
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 3.7e-43 178.3 127 64.6
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 8.2e-43 177.2 127 64.6
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.1e-42 176.8 127 65.4
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 2.4e-42 175.6 127 63.0
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 2.7e-41 172.2 127 63.0
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 4.5e-41 171.4 127 63.8
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 2.2e-40 169.1 132 61.4
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 8.8e-37 157.1 127 59.8
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 1.2e-36 156.8 128 58.6
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 4.4e-36 154.8 125 59.2
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 1.3e-35 153.3 121 58.7
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 3.7e-35 151.8 125 60.0
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 8.3e-35 150.6 125 57.6
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 8.3e-35 150.6 125 59.2
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 1.1e-34 150.2 125 60.0
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 1.4e-34 149.8 127 53.5
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 1.2e-33 146.7 128 55.5
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 2.0e-33 146.0 125 58.4
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 2.7e-33 145.6 116 58.6
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 1.0e-32 143.7 116 56.0
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 2.3e-32 142.5 124 53.2
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 2.9e-32 142.1 127 54.3
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 5.0e-32 141.4 125 52.0
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 5.0e-32 141.4 125 52.0
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 5.0e-32 141.4 121 54.5
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 5.0e-32 141.4 125 55.2
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 8.6e-32 140.6 127 53.5
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 1.5e-31 139.8 119 55.5
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 1.5e-31 139.8 127 55.9
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 1.5e-31 139.8 117 58.1
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 3.2e-31 138.7 119 54.6
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 5.5e-31 137.9 119 53.8
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 5.5e-31 137.9 127 55.1
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 7.2e-31 137.5 126 53.2
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 2.8e-30 135.6 126 51.6
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 2.8e-30 135.6 109 56.0
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 3.6e-30 135.2 125 56.0
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 4.7e-30 134.8 125 52.0
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 8.0e-30 134.0 125 53.6
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 1.8e-29 132.9 127 53.5
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 2.3e-29 132.5 119 51.3
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 2.3e-29 132.5 125 53.6
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 3.0e-29 132.1 119 51.3
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 5.2e-29 131.3 125 53.6
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 5.2e-29 131.3 117 50.4
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 6.8e-29 131.0 87 72.4
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 6.8e-29 131.0 125 52.8
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 8.8e-29 130.6 125 48.0
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 8.8e-29 130.6 119 53.8
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 1.5e-28 129.8 125 51.2
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 2.0e-28 129.4 114 56.1
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 5.7e-28 127.9 120 51.7
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 2.2e-27 125.9 117 51.3
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 3.7e-27 125.2 125 51.2
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 4.9e-27 124.8 117 50.4
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 2.4e-26 122.5 125 49.6
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 7.0e-26 120.9 117 49.6
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 7.0e-26 120.9 117 49.6
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 1.2e-25 120.2 127 47.2
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 1.2e-25 120.2 125 52.0
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 1.6e-25 119.8 106 50.9
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 1.6e-25 119.8 125 48.0
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 2.0e-25 119.4 150 44.0
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 4.5e-25 118.2 86 62.8
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 1.3e-24 116.7 88 61.4
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 8.6e-24 114.0 126 45.2
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 1.1e-23 113.6 119 44.5
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 1.6e-22 109.8 102 54.9
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 3.6e-22 108.6 103 52.4
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 6.1e-22 107.8 97 49.5
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 1.4e-21 106.7 122 45.9
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 4.0e-21 105.1 111 47.7
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 5.7e-20 101.3 93 49.5
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 1.3e-19 100.1 113 41.6
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 2.2e-19 99.4 70 62.9
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 2.9e-19 99.0 130 43.8
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 1.1e-18 97.1 125 44.8
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 1.7e-16 89.7 63 69.8
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 8.6e-16 87.4 110 37.3
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 2.5e-15 85.9 136 37.5
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 5.6e-15 84.7 70 54.3
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 4.0e-13 78.6 79 49.4
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 6.8e-13 77.8 116 37.1
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 2.2e-11 72.8 60 53.3
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 1.9e-10 69.7 65 47.7
AUR62008666 Chenopodium quinoa HOM05D007613 ORTHO05D009344 9.2e-10 67.4 73 46.6
MD11G1309700 Malus domestica HOM05D007613 ORTHO05D009344 2.0e-09 66.2 64 51.6
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 6.0e-09 64.7 92 35.9
Carub.0005s2952 Capsella rubella HOM05D001675 ORTHO05D001808 7.8e-09 64.3 45 60.0
unitig_0.g668 Utricularia gibba HOM05D007613 ORTHO05D009344 3.0e-08 62.4 44 68.2
Hund18170 Selenicereus undatus HOM05D007613 ORTHO05D009344 6.6e-08 61.2 59 50.8
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 8.6e-08 60.8 63 46.0
Cfa005911 Carpinus fangiana HOM05D007613 ORTHO05D009344 1.9e-07 59.7 132 35.6
Thhalv10017379m.g Eutrema salsugineum HOM05D002174 ORTHO05D005941 7.3e-07 57.8 108 29.6
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 9.5e-07 57.4 135 31.1
FAN24G3183 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.2e-06 57.0 61 42.6
FAN21G2955 Fragaria x ananassa HOM05D002174 ORTHO05D005941 2.8e-06 55.8 107 30.8
BcaC02g11023 Brassica carinata HOM05D002174 ORTHO05D005941 3.6e-06 55.5 108 27.8
C04p22080 Brassica napus HOM05D002174 ORTHO05D005941 3.6e-06 55.5 108 27.8
BolC4t23731H Brassica oleracea HOM05D002174 ORTHO05D005941 3.6e-06 55.5 108 27.8
Carub.0004s0989 Capsella rubella HOM05D002174 ORTHO05D005941 3.6e-06 55.5 108 26.9
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 4.7e-06 55.1 49 53.1
FvH4_3g36080 Fragaria vesca HOM05D002174 ORTHO05D005941 6.2e-06 54.7 99 31.3
FAN16G0236 Fragaria x ananassa HOM05D002174 ORTHO05D005941 6.2e-06 54.7 99 31.3
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 6.2e-06 54.7 100 35.0
BcaB02g10211 Brassica carinata HOM05D002174 ORTHO05D005941 8.1e-06 54.3 99 30.3
A07p19380 Brassica napus HOM05D002174 ORTHO05D005941 8.1e-06 54.3 108 27.8
BraA07t29643Z Brassica rapa HOM05D002174 ORTHO05D005941 8.1e-06 54.3 108 27.8
CARHR122070 Cardamine hirsuta HOM05D002174 ORTHO05D005941 8.1e-06 54.3 95 30.5
Os05g0111200 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005941 8.1e-06 54.3 99 28.3
Sp4g11710 Schrenkiella parvula HOM05D002174 ORTHO05D005941 8.1e-06 54.3 99 30.3


User provided reference genes

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