Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 6.1e-65 250.8 134 100.0
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 4.4e-39 164.9 102 86.3
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 6.4e-38 161.0 102 85.3
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.2e-36 156.8 105 81.0
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 1.2e-36 156.8 101 83.2
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 1.6e-36 156.4 105 78.1
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 4.6e-36 154.8 104 79.8
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 4.6e-36 154.8 104 79.8
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 4.6e-36 154.8 100 81.0
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 5.9e-36 154.5 100 80.0
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 1.0e-35 153.7 108 77.8
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 1.0e-35 153.7 100 79.0
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.3e-35 153.3 104 78.8
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.3e-35 153.3 104 78.8
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 1.3e-35 153.3 105 75.2
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 2.3e-35 152.5 101 81.2
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 2.3e-35 152.5 101 80.2
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 2.9e-35 152.1 101 80.2
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 3.9e-35 151.8 100 78.0
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 3.9e-35 151.8 105 73.3
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 3.9e-35 151.8 105 75.2
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 5.0e-35 151.4 101 79.2
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 6.6e-35 151.0 102 76.5
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 6.6e-35 151.0 104 76.0
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 6.6e-35 151.0 104 77.9
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 6.6e-35 151.0 105 74.3
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 8.6e-35 150.6 100 78.0
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 8.6e-35 150.6 100 78.0
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 8.6e-35 150.6 104 75.0
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 1.1e-34 150.2 100 78.0
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 1.1e-34 150.2 100 77.0
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 1.5e-34 149.8 100 80.0
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 1.9e-34 149.4 104 75.0
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 1.9e-34 149.4 104 75.0
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 2.5e-34 149.1 99 76.8
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 2.5e-34 149.1 99 76.8
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 2.5e-34 149.1 99 76.8
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 2.5e-34 149.1 99 76.8
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 2.5e-34 149.1 104 75.0
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 2.5e-34 149.1 104 75.0
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 3.3e-34 148.7 99 77.8
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 3.3e-34 148.7 104 74.0
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 3.3e-34 148.7 99 76.8
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 7.3e-34 147.5 99 78.8
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 7.3e-34 147.5 100 76.0
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 7.3e-34 147.5 104 74.0
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 9.5e-34 147.1 100 77.0
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 1.6e-33 146.4 99 75.8
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 2.1e-33 146.0 107 72.9
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 2.8e-33 145.6 106 72.6
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 3.6e-33 145.2 102 74.5
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 3.6e-33 145.2 102 75.5
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 4.7e-33 144.8 98 76.5
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 4.7e-33 144.8 103 73.8
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 6.2e-33 144.4 99 74.7
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 6.2e-33 144.4 102 73.5
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 6.2e-33 144.4 103 73.8
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 8.0e-33 144.1 99 75.8
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 8.0e-33 144.1 131 61.8
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 8.0e-33 144.1 98 77.6
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 1.0e-32 143.7 99 74.7
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 1.4e-32 143.3 110 70.9
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 1.4e-32 143.3 99 74.7
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 2.3e-32 142.5 102 71.6
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 2.3e-32 142.5 101 75.2
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 3.1e-32 142.1 128 64.1
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 5.2e-32 141.4 101 72.3
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 5.2e-32 141.4 98 73.5
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 8.9e-32 140.6 100 73.0
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 8.9e-32 140.6 107 72.0
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 2.0e-31 139.4 100 72.0
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 3.4e-31 138.7 99 73.7
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 4.4e-31 138.3 124 66.9
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 5.8e-31 137.9 100 71.0
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 7.5e-31 137.5 105 70.5
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 9.8e-31 137.1 99 73.7
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 1.3e-30 136.7 98 74.5
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 1.3e-30 136.7 99 68.7
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 1.7e-30 136.3 105 69.5
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 2.2e-30 136.0 101 70.3
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 2.9e-30 135.6 101 72.3
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 6.4e-30 134.4 99 69.7
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 1.9e-29 132.9 98 69.4
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 2.4e-29 132.5 98 72.4
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 2.4e-29 132.5 98 71.4
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 9.2e-29 130.6 104 68.3
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 1.6e-28 129.8 98 68.4
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 1.6e-28 129.8 101 67.3
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 1.6e-28 129.8 101 68.3
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 3.5e-28 128.6 101 68.3
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 1.0e-27 127.1 102 71.6
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 3.0e-27 125.6 106 64.2
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 3.9e-27 125.2 103 66.0
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 3.9e-27 125.2 103 66.0
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 6.6e-27 124.4 163 52.1
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.1e-26 123.6 83 83.1
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 1.5e-26 123.2 104 60.6
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 2.5e-26 122.5 101 63.4
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 3.3e-26 122.1 89 75.3
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 5.6e-26 121.3 103 63.1
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 7.3e-26 120.9 80 80.0
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 7.3e-26 120.9 101 63.4
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 1.6e-25 119.8 76 82.9
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 2.1e-25 119.4 101 65.3
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 8.1e-25 117.5 78 78.2
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 5.2e-24 114.8 100 57.0
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 1.5e-23 113.2 77 76.6
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 3.4e-23 112.1 79 70.9
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 4.9e-22 108.2 83 67.5
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 3.2e-21 105.5 74 74.3
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 4.1e-21 105.1 76 72.4
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 1.6e-20 103.2 76 69.7
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 1.6e-20 103.2 105 55.2
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 2.7e-20 102.4 74 68.9
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 2.7e-20 102.4 108 54.6
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 4.6e-20 101.7 80 70.0
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 8.6e-19 97.4 105 49.5
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 1.1e-18 97.1 81 64.2
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 3.3e-18 95.5 75 65.3
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 9.9e-15 84.0 106 43.4
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 1.7e-14 83.2 90 48.9
BcaC07g40760 Brassica carinata HOM05D002674 ORTHO05D008041 2.4e-13 79.3 72 59.7
BolC8t51336H Brassica oleracea HOM05D002674 ORTHO05D008041 2.4e-13 79.3 72 59.7
RcHm_v2.0_Chr2g0146991 Rosa chinensis HOM05D002674 ORTHO05D008041 3.5e-12 75.5 54 77.8
CBR_g24042 Chara braunii HOM05D002674 ORTHO05D008041 1.5e-10 70.1 84 45.2
Peaxi162Scf00545g00027 Petunia axillaris HOM05D002674 ORTHO05D008041 5.6e-10 68.2 51 62.7
MCO07G465 Micromonas commoda HOM05D002674 ORTHO05D008041 1.4e-08 63.5 93 36.6
PSO832G3862 Papaver somniferum HOM05D001297 ORTHO05D001135 1.7e-06 56.6 76 44.7


User provided reference genes

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