Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 4.1e-148 528.1 275 100.0
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 3.9e-98 362.1 283 67.5
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 3.5e-91 339.0 279 71.7
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 6.6e-90 334.7 276 67.0
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 8.3e-85 317.8 278 63.3
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 9.2e-84 314.3 283 62.2
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 9.2e-84 314.3 288 62.2
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 1.7e-82 310.1 286 61.2
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 8.6e-82 307.8 275 67.3
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 5.6e-81 305.1 275 66.5
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 5.6e-81 305.1 275 66.9
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 3.6e-80 302.4 281 60.9
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 3.6e-80 302.4 283 61.8
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 4.7e-80 302.0 278 62.6
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.1e-79 300.8 280 63.9
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 1.8e-79 300.1 283 64.7
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 2.6e-78 296.2 281 60.1
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 2.6e-78 296.2 285 63.2
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 2.6e-78 296.2 276 65.9
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 7.6e-78 294.7 281 59.8
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 3.7e-77 292.4 284 65.5
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.1e-76 290.8 283 61.1
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.1e-76 290.8 273 59.3
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 5.4e-76 288.5 286 63.3
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 5.4e-76 288.5 284 65.1
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 9.2e-76 287.7 284 64.8
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 1.2e-75 287.3 286 60.5
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 2.1e-75 286.6 288 61.1
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 2.7e-75 286.2 282 63.1
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 1.3e-74 283.9 290 60.0
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.7e-74 283.5 284 64.1
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 8.6e-74 281.2 281 58.0
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.5e-73 280.4 277 58.5
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 1.2e-72 277.3 284 60.2
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 6.2e-72 275.0 285 60.0
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 1.4e-71 273.9 279 59.5
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 4.0e-71 272.3 286 59.4
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 6.8e-71 271.6 284 59.5
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 4.4e-70 268.9 284 54.9
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 3.8e-69 265.8 286 58.4
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 6.4e-69 265.0 281 58.7
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 4.2e-68 262.3 292 57.2
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 1.2e-67 260.8 276 59.4
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 1.0e-66 257.7 305 53.8
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 1.3e-66 257.3 271 60.1
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 1.9e-65 253.4 270 60.0
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 3.3e-65 252.7 288 56.2
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 4.3e-65 252.3 293 56.3
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 5.6e-65 251.9 290 54.8
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 5.6e-65 251.9 203 68.5
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 3.6e-64 249.2 283 56.2
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 6.9e-63 245.0 286 55.2
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 9.9e-62 241.1 294 55.1
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 1.3e-61 240.7 254 60.2
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.9e-61 239.6 292 53.8
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 3.8e-61 239.2 287 54.0
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 8.4e-61 238.0 276 54.3
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 3.2e-60 236.1 288 55.2
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 4.2e-60 235.7 277 54.5
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 3.5e-59 232.6 276 56.9
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 4.6e-59 232.3 273 53.5
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 6.6e-58 228.4 294 49.7
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 2.5e-57 226.5 307 50.2
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 9.6e-57 224.6 250 56.8
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 1.1e-55 221.1 257 59.9
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 5.3e-55 218.8 283 52.7
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 1.3e-53 214.2 302 50.7
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 1.3e-53 214.2 294 50.0
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 1.7e-53 213.8 284 51.4
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 1.7e-53 213.8 283 53.0
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 2.4e-52 209.9 287 50.9
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 5.5e-52 208.8 285 51.6
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 9.3e-52 208.0 292 49.3
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 1.6e-51 207.2 250 52.4
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 2.7e-51 206.5 283 49.8
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 3.5e-51 206.1 277 53.4
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.0e-50 204.5 311 47.9
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 2.3e-50 203.4 280 48.2
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 3.0e-50 203.0 285 50.9
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 5.1e-50 202.2 278 48.9
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 8.7e-50 201.4 278 48.9
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 5.6e-49 198.7 293 48.5
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 9.6e-49 198.0 288 47.6
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 1.3e-48 197.6 278 48.2
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 1.6e-48 197.2 278 47.8
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 2.1e-48 196.8 278 48.2
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 2.1e-48 196.8 293 48.8
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 3.7e-48 196.1 172 68.6
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 2.6e-46 189.9 278 46.4
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 5.8e-46 188.7 283 47.3
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 1.0e-45 188.0 173 72.3
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 1.0e-45 188.0 254 51.2
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 4.2e-44 182.6 232 54.3
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 1.2e-43 181.0 230 54.8
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 6.0e-43 178.7 268 46.6
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 3.0e-42 176.4 276 48.9
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 1.3e-40 171.0 255 49.8
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 5.9e-38 162.2 256 46.1
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.3e-37 161.0 229 51.5
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 5.0e-37 159.1 279 40.5
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 4.6e-35 152.5 253 45.1
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 5.1e-34 149.1 221 50.2
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 9.7e-33 144.8 106 75.5
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 4.1e-31 139.4 252 44.8
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 2.0e-30 137.1 342 36.3
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 5.5e-28 129.0 236 41.5
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.2e-27 127.9 183 52.5
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 6.9e-23 112.1 93 61.3
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 1.0e-18 98.2 228 37.3
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 1.1e-17 94.7 185 42.2
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 1.1e-15 88.2 182 39.6
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 3.3e-09 66.6 203 35.5
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 9.7e-09 65.1 90 45.6
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 8.2e-08 62.0 78 47.4


User provided reference genes

Program Settings